Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01371 ATGAAGCAAATTCGTCAACGCCAAAGGATCATTATTCTCTCTCTCCTCTCTCTTTCCGTTGTTGCTCCTCTCATTTTCCTCGGGAGAAGAGAGTTCCTTCAAGATTTGTATCGCGTTACATACAGGACAGATGGTTTGAAGTTAAATGTTGTAGAACATGGAGGTGCTGAAGAATTTAAAGAGCAAAATCTAGTTGGTTATAAAGAAAAAGATGTTTCAACAATTAGTTACGATTCAAAAAAGAATAATGATGCTGAGGAATCTAGAATTCCAGCGTTGGAAAGAAATGTTTCAGGATTCAGCCAAGATGGGGATGCTCAGAAAAAAGATTCATCCTCTACGGATGACGATATAAATGTACATGCTGCATATAGAATGTCAAAGGAGAATATTACCTCGACAAATAGGCCATCTCGTCAAAAACAAGCTGTTCCGTATAGAATGTCAAAGGAGAATGTCAAAAGAGAAGACCGTCATCGTATTTTAAACCCTCCCTCTCGGGAAGTGAAAAATCAGAAGGTTCAAGAGATTAAGGATCAAATTTTAATGGCTAAAGTATACTTGAAGTTTGCACCGCCAAGCAGCAACTCACACTTGAAGGAGCTGGAGCTGCAAATGAAAGAGATGGAACGAAGAGTAGAAGGAGTCACCCGGGATAGAGATTTGTCAAGGAGTGTTTTGCAGGCAATGCGACACATGGAAGCCTCACTATCTACTGTCAGCCGTGCTTTCTCTGACTGCTCTATGGTTTCTAAGCTTCAAGCAATGAAGCACAAAACTGAAGAGCAAGTTCGTTTTCAGAGAAGCCAAGCGACATATCTTGTTCATCTTGCTGTAAGGACTGCCCAAAAAAACTTTCACTGTCTTTCTATGAGGCTGACTACTGAATATTTTTCCCTGAGACCTGAGGAGAGAGAGCTTCCAAATGAAAATAAGATTCATCTTCCAGATCTTTATCATTATGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTTGTTGTTAACTCTACTGTCTCTACTGCCAAGGAACCAGAGAAACTTGTTTTCCATATATCCATGTACAGAGCACAGAAAACTTTGAATGACATTTTCCCTGCCCTAAATAAGATTGTGATATTTGATCATGATGTGGTGGTTCAACAAGATCTCAGTGTACTATGGAATGCCGATATGAAGGGAAATGTTATTGGAGCAGTTGGAACTTGTCAGGAAGGAAAAACCCCATTTCATAGGATTGATGCATTCATAAACTTCACAGATCCACTAATCGGAGAGAGTTTTGATGCCAATTCTTGCACATGGGCGTTTGGGATGAATTTGTTTGATTTGCAACAATGGAGGAGACATAATTTAACGGCTGTTTATCACAAATATTCACAAATGGGTTCTGAGAAGCCATTGTGGAACCGGAACAACGAACGTCTTCCTTTAGGTTGGCTTACCTTCTATAACAAGACGGAGGTGTTGGACAGACAATGGCACATTCTTGGCCTTGGTCATAACTCAGGAGTTGATCGAAATGAGATCGAGCAGGCTGCCGTTATACACTACGATGGTATTAGGAAGCCATGGTTAGATATTGCAATGGGCAGATATAAAAGTTACTGGACCAAATATTTGAATTTTGACCACCCTTTTCTGCAACAGTGCAATCTTCAGGCGTAG 1668 0.4053 MKQIRQRQRIIILSLLSLSVVAPLIFLGRREFLQDLYRVTYRTDGLKLNVVEHGGAEEFKEQNLVGYKEKDVSTISYDSKKNNDAEESRIPALERNVSGFSQDGDAQKKDSSSTDDDINVHAAYRMSKENITSTNRPSRQKQAVPYRMSKENVKREDRHRILNPPSREVKNQKVQEIKDQILMAKVYLKFAPPSSNSHLKELELQMKEMERRVEGVTRDRDLSRSVLQAMRHMEASLSTVSRAFSDCSMVSKLQAMKHKTEEQVRFQRSQATYLVHLAVRTAQKNFHCLSMRLTTEYFSLRPEERELPNENKIHLPDLYHYAVFSDNVLACAVVVNSTVSTAKEPEKLVFHISMYRAQKTLNDIFPALNKIVIFDHDVVVQQDLSVLWNADMKGNVIGAVGTCQEGKTPFHRIDAFINFTDPLIGESFDANSCTWAFGMNLFDLQQWRRHNLTAVYHKYSQMGSEKPLWNRNNERLPLGWLTFYNKTEVLDRQWHILGLGHNSGVDRNEIEQAAVIHYDGIRKPWLDIAMGRYKSYWTKYLNFDHPFLQQCNLQA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01371 555 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 285 545 IPR029044 -
Vifa3g01371 555 MobiDBLite consensus disorder prediction 126 142 - -
Vifa3g01371 555 SUPERFAMILY Nucleotide-diphospho-sugar transferases 319 552 IPR029044 -
Vifa3g01371 555 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 360 553 IPR029993 GO:0047262
Vifa3g01371 555 Pfam Glycosyl transferase family 8 361 529 IPR002495 GO:0016757
Vifa3g01371 555 Coils Coil 199 219 - -
Vifa3g01371 555 MobiDBLite consensus disorder prediction 78 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01371 Vifa-Chr3 353072845 353076323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01371 1 555 Glycosyltransferase AT1G06780 41.486 7.75e-161 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01371 K13648 - gmx:100819088 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01371 3 353072845 353076323 Vifa3g01371 3 353072845 353076323 ECH
Vifa5g02623 5 874184382 874185612 Vifa3g01371 3 353072845 353076323 PCT