Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02588 ATGGAACCAATCAACTGTCTGCAGCCTGAATTTGTTCCAACCGGCGGCCGCACCACCCCTCTGCCGGAGAGTCCCCGAGTTCCTATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCAGCTCTTGAAGTCACAAAAGCTATTGCACCAGCTCATTCTCAACCTCCTCTTTCATCATGCATGCCTTCAAATGGTTCTACTCCTGAAGAAACCAGTATCTACTCTATCTCTGAGGAACTCTCGAACGTGTCTAAGAATCAGTTTTCTTTCGCTTCCTCTGCTACTTCACAGCTTGTCCTTGAACGCATTATGTCACACTCCGCTAGAGAGGAAGTGTCACCGTTAACATCTGGTAGATTATCTCACAGTAGTGAGCCTTTGAATGGTAATGGTGCCTTAACAGGAACAGACAGTCCACCAATTTCAAATTCAGATGAATTTGACGATGTTGTTAAGTTTTTTCGGGCGAACAATTCCATTCATCCGTTGTTCAATGGTGGAAGAGCAAATGGGGCCATTGGCAACAGCACAGCCGTTTCAGGACCTAAAACTGTAGGAAGATGGTTGAAAGAGAGAAGAGAAAAGAAGAAAGAAGAAAACAGAACACATAATGCTCAAATGCATGCTACTATTACTGTGGCTGCTCTTGCTGCTGCTATAGCAGCCATTGCTGCTGCAACAGCTGCCTCATCGACGGCAAACATAGACGAGAAGATGGCCAAGACTGACGTGGCTGTTGCTTCGGCTACCACATTAGTTGCTGCACAATGTGTGGAGGCTGCTGAAGCAATGGGAGCCGAGCGCGACCACCTAGCTTCAGTGGTCAGCTCAGCCGTGAATGTCCGTTCTCATGATGATATATCTACTCTTACTGCTGCAGCTGCCACAGCTCTCCGAGGAGCGGCAACATTAAAAGCTAGAGCTTTAAAGGACGTATGGAATATTGCTGCAGTAACACCACTGGAGAATGGAATAGGCGGCATGACAATAAATGGAAAAGGGAATAATATAAGCAACAGCAACAGCAGCACCAGTGATAGTGGAGAAACTATAAATGCATATAATTTTACAGGTTCCAGCATTCAAGAGTTACTTGCTAAAGGCAGTGAATTACTCAAACGCACCCGAAACGGTGATCTGCATTGGAAAATAGTTTCTGTTTACATACATCGAACGGGACAGGTAAAACTAAAAATGAAGAGCAAACTTGTTGCAGGAAAAATTACAAAAAAGAACAAGAATGTTGTTCTAGATGTGTGCACAGACTTACCAGCATGGCCAGGAAGAGATATTTTAGAAGATGGAGAAAAACGACACTACTTCGGATTGAAAACAGACACTAGGGGAATTGTCGAGTTCGAGTGTAGAACTCAAAGAGAATATGATATTTGGACACAAGGAGTTTCTAGACTTCTCTCAATCGTCAGGCAAAGACAAAACAAATACAACAGTTGA 1452 0.4421 MEPINCLQPEFVPTGGRTTPLPESPRVPMEFLSRSWSASALEVTKAIAPAHSQPPLSSCMPSNGSTPEETSIYSISEELSNVSKNQFSFASSATSQLVLERIMSHSAREEVSPLTSGRLSHSSEPLNGNGALTGTDSPPISNSDEFDDVVKFFRANNSIHPLFNGGRANGAIGNSTAVSGPKTVGRWLKERREKKKEENRTHNAQMHATITVAALAAAIAAIAAATAASSTANIDEKMAKTDVAVASATTLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDISTLTAAAATALRGAATLKARALKDVWNIAAVTPLENGIGGMTINGKGNNISNSNSSTSDSGETINAYNFTGSSIQELLAKGSELLKRTRNGDLHWKIVSVYIHRTGQVKLKMKSKLVAGKITKKNKNVVLDVCTDLPAWPGRDILEDGEKRHYFGLKTDTRGIVEFECRTQREYDIWTQGVSRLLSIVRQRQNKYNS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02588 483 MobiDBLite consensus disorder prediction 108 140 - -
Vifa5g02588 483 Pfam Plant pleckstrin homology-like region 369 474 IPR013666 -
Vifa5g02588 483 Pfam Auxin canalisation 22 322 IPR008546 -
Vifa5g02588 483 PANTHER EXPRESSED PROTEIN 18 475 IPR040269 -
Vifa5g02588 483 MobiDBLite consensus disorder prediction 109 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02588 Vifa-Chr5 862037593 862039542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02588 - - gmx:100805743 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02588 5 862037593 862039542 Vifa5g02588 5 862037593 862039542 ECH
Vifa5g02588 5 862037593 862039542 Vifa3g01401 3 364996401 364999173 PCT