Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01401 ATGGAACCAAAGTTCAGAATCAATTGCAACAGAAATAACAATGACTATCTTCCAACAACAAACAATGCCACTTCTCGTTTGCCTGAGAGTCCAAGAATACCAATGGAGTTTCTCTCAAGGTCATGGAGTGCTTCTGCATTTGAAGTCTCTAAAGCCTTGTCACCTCAACCACCACCACCACCTCCTCCTTCTTGCTTAACTTCCAATAAACCTTCTACTATCTCTATACCTGAAGAAACCATGTCTGGAAATCAATTCTCTTTTGCTACTTCTGCTACTTCACAGCTTGTCCTTGAACGTATCATGTCACAGTCTGCAAGAGAGGAAGTATCTCCATTAACATCAGGTAGATTGTCTCATAGCAGTGAACCATTGAATGGTGGTGGTTCTTTAACAGGAACAGATAGTCCTCCAATTTCTCCTTCTGATGAATTTGATGATGTTATTAAGTTTTTCCGTGCAAACAATTCGATACATGCTTTATTCAATGGTACAAGAGCAATGAGTAGTGGACTTGGCAATGCAACTCCTAGTTCAGGACCAAAAACAGTAGGAAGATGGTTGAAAGAAAGAAGAGAGAAAAAGAAAGAAGAAAACAGAAGCCATAATGCTCAAGTTCATGCTGCTATTTCTGTAGCAGCAGTAGCATCTGCCGTTGCTGCCATCACAGCAGCAACGGCAGCATCGTCTGTGTCAAACAAGGATGAGAGAATGGCTAAGACTGATATGGCTGTGGCTTCTGCAGCAACACTGATTGCTGCTCAGTGTGTTGAAGCTGCTGAAGCAATGGGAGCTGAGAGAGAACACCTTGCTTCTGTTGTTAGTTCTGCTGTCAATGTGAGATCTTATGATGATATTACTACTCTAACTGCTGCAGCTGCCACAGCTCTAAGGGGCGCAGCAACATTGAAGGCAAGAGCATTGAAAGAGATGTGGAATATTAGTGCTGTGACACCACTAGAAAAAAGCATAGGAATCGGAATATGCGGCGGTAAAGCCAATACTAACAGTAGTTCTAGCACTAGTGATAGTGGTGGAGAGATTATCAATGCAGATAATTTTCTAAGTGCTTGCAGTCAAGAACTCCTTGCTCGAGGAACTGAATTACTCAAACGCACCCGCAAAGGTGATCTTCACTGGAAAATAGTTTCTGTTTATATACATCGAACCGGCCAAGTGATGTTGAAAATGAAAAGCAGACATGTTGCAGGAACAATTACAAAAAAGAAAAAGAATGTTGTGTTAGATGTGTGCATGAATTTAGCAGCATGGCCAGGAAGGCATCTATTAGAGGATGGTGAGAAAAGAAGGTACTTTGGATTGAAGACAGAATCAAGAGGTTTAGTTGAGTTTGAATGTAGAAATCAAAGAGAATATGAATTGTGGACTCAAGGTGTTTCAAGGCTTCTTTCAATTGTTTCACATAGGAAAAACAGAAATGGGATCTAA 1449 0.4099 MEPKFRINCNRNNNDYLPTTNNATSRLPESPRIPMEFLSRSWSASAFEVSKALSPQPPPPPPPSCLTSNKPSTISIPEETMSGNQFSFATSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVIKFFRANNSIHALFNGTRAMSSGLGNATPSSGPKTVGRWLKERREKKKEENRSHNAQVHAAISVAAVASAVAAITAATAASSVSNKDERMAKTDMAVASAATLIAAQCVEAAEAMGAEREHLASVVSSAVNVRSYDDITTLTAAAATALRGAATLKARALKEMWNISAVTPLEKSIGIGICGGKANTNSSSSTSDSGGEIINADNFLSACSQELLARGTELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDVCMNLAAWPGRHLLEDGEKRRYFGLKTESRGLVEFECRNQREYELWTQGVSRLLSIVSHRKNRNGI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01401 482 MobiDBLite consensus disorder prediction 107 139 - -
Vifa3g01401 482 PANTHER EXPRESSED PROTEIN 23 475 IPR040269 -
Vifa3g01401 482 MobiDBLite consensus disorder prediction 53 67 - -
Vifa3g01401 482 MobiDBLite consensus disorder prediction 107 142 - -
Vifa3g01401 482 MobiDBLite consensus disorder prediction 50 82 - -
Vifa3g01401 482 Pfam Auxin canalisation 28 322 IPR008546 -
Vifa3g01401 482 Pfam Plant pleckstrin homology-like region 368 473 IPR013666 -
Vifa3g01401 482 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01401 Vifa-Chr3 364996401 364999173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01401 - - gmx:100782024 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01401 3 364996401 364999173 Vifa3g01401 3 364996401 364999173 ECH
Vifa5g02588 5 862037593 862039542 Vifa3g01401 3 364996401 364999173 PCT