Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02553 ATGGAGCTTAGTAAAGTGACGTTAGAGATATTCACAAAACTTGAACAACAATGGCTCTCAGTTTCACAATGTGGAGCCACCTCCAAAACCCGCATACTAAGCATTGATGGTGGAGGAACCACCGCCATTGTCTCCGGCACTGTCTTAGTCCATCTCGAGGACCAGATCCGCTCACAAACCAAAGATCCTCACGCTCAAATCAGTGATTACTTCGACATTATCACCGGCACGGGCATTGGCGCGATACTTGCTGCTATGATCACTGCTGATGACGGTTTCGGTAGGCCTCTCTACACTGCTAGAGATGCTGTTGCTTTCATCGCTGATAAGAATCGTGAACTTTACAAACCGAAGTCTGTAGGCGTTTTTCGCCGGGGGCTAGGATTCTCTTCGAGAAATATGGAGAGATTGTTGAAGAAAGTGTTTCAAAGAAAAGAAAATGAAGGAAAATTGTTGACGTTAAAGGACACGTGTAAGCCTTTGCTTATCCCTTGCTTCGATCTCAAGACCTCAGCGCCGTTCGTTTTCTCACGAGCCGACGCCTCCGAGTCGGAGAGTTTCAACTTTGAGCTATGGAAGGTCTGTCGCGCCACGTCATCGACTCCAAGCCTCTTCAAACCCTTCCAATTTGCCTCCCTTGATGGTAAAACCTCTTGCTCAGCAGTCGACGGTGGTCTGGTGATGAACAATCCGGCGGCAGCGGCTGTCACGCATGTTCTCCACAACAAACGCGATTTCCCGGCGGTGAATAGCGTGGAGGATCTGATGGTTCTGTCGATCGGAAACGGAGCGCCGGCGAATAGAGTGCGTGATATCCGTGAATGCTCGACGTCGACGGTGGTTGACATTGCTCTCGACGGCGTTTCGGAAACCGTTGATCAGATGATGGGAAACGCCTTCAGTTGGAACCGTACTGACTACGCCAGAATTCAGTGTGTTTTTGTGCAGGCGTATAGTTTTGGAGAAATGGAGGTGTTGAAGGAGAGAGTGTTGGAGTCATTGCCGTTTGGTGGGAAGCGGTTACTAGAAGAAACAAACGGTAACAGAATTGAGAGATTTGTGCAACGTCTTGTTGCTACTGGAAAGTCTAGTTTACCACCTAGTCCTTGTAAGGTTACGCCGTTAGTTTCTAGCTAA 1137 0.4864 MELSKVTLEIFTKLEQQWLSVSQCGATSKTRILSIDGGGTTAIVSGTVLVHLEDQIRSQTKDPHAQISDYFDIITGTGIGAILAAMITADDGFGRPLYTARDAVAFIADKNRELYKPKSVGVFRRGLGFSSRNMERLLKKVFQRKENEGKLLTLKDTCKPLLIPCFDLKTSAPFVFSRADASESESFNFELWKVCRATSSTPSLFKPFQFASLDGKTSCSAVDGGLVMNNPAAAAVTHVLHNKRDFPAVNSVEDLMVLSIGNGAPANRVRDIRECSTSTVVDIALDGVSETVDQMMGNAFSWNRTDYARIQCVFVQAYSFGEMEVLKERVLESLPFGGKRLLEETNGNRIERFVQRLVATGKSSLPPSPCKVTPLVSS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02553 378 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 33 236 IPR002641 GO:0006629
Vifa5g02553 378 SUPERFAMILY FabD/lysophospholipase-like 29 322 IPR016035 -
Vifa5g02553 378 Gene3D Cytosolic phospholipase A2 catalytic domain 22 365 - -
Vifa5g02553 378 Pfam Patatin-like phospholipase 33 235 IPR002641 GO:0006629
Vifa5g02553 378 PANTHER PATATIN-LIKE PROTEIN 6 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02553 Vifa-Chr5 849718444 849719716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02553 1 375 Acyl Lipid Metabolism Gene Families AT3G63200 67.708 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02553 - - gmx:100806989 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02553 5 849718444 849719716 Vifa5g02553 5 849718444 849719716 ECH
Vifa5g02553 5 849718444 849719716 Vifa3g01428 3 372569730 372571160 PCT