Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01428 ATGGATCTCACTAAAGTCACCCTAGAGATCTTCTCCAAACTCGAACACAAATGGCTTTCTCATTGCAAAGATACATCCACCACCAAAACCCGCATTCTCAGCATTGACGGTGGAGGAACCACCGCCATTGTTGCCGGCGCTGCATTAATCCATCTCGAGGACCAGATCCGTCTCCAGACATCTGATCTCCATGCTCAGATATCAGATTTCTTCGACATTGTAGCCGGTACCGGCATTGGCGCCATTCTTGCTGCAATGATAACCGCCGCCGATTCATTCGGCAGGCCTCTGTATACAGCCAGAGAAGCCGTGAAAATTATCACAGAGAGAAACTCGGAACTCTACAAACTCAAATCCGCCGGAATATTTCGCCGACGGCGGAGTAGAAGATTTTCATCCAAGAACATGGATAACGTGTTGAAGCAAGTGTTCTTTAGAAAAGAAGATGCACGGATGTTGACCTTGAAGGACACGTGTAAACCGTTGCTTATACCTTGCTTTGACCTCAAGAGTTCGGCTCCATTCGTCTTTTCACGAGCCGATGCGTCAGAATCTCCTAGCTTCAACTTCGAGCTCTGGAAAGTATGCCGCGCCACGTCAGCAACACCGAGTCACTTCAAGCCGTTCAACTTCGCTTCCGTCGACGAAAAGACCTCTTGCTCCGCCGTAGACGGCGGTTTGGTGATGAACAATCCTACGGCAGCGGCTGTCACGCATGTTTTACATAACAAACGCGATTTTCCAACGGTGAACGGCGTGGAGGATCTTTTGGTCCTTTCTTTTGGAAACGGATCGTCCAACTCGAAAACATATGAGAGCCGCACGTGCTCAACGCCGTCGGTGGTTGACATTGTTCTCGACGGCGTTTCCGAGACTATTGACCAAATGCTTGGTAACGTCTTCTGTTGGAATCGTACGGATTACGTCAGAATTCAGGCATTTGGTTTGGGGAACGAAGGAGTGAGGAAAGAGGGAGATGTGGAAGAAGTGGTGCTGAAGGAAAGAGGATTGGAGTCGTTACCGTTTGGAGGGAAGCGGTTACTGACGGAGACAAACGGAAATAGGATCGATAGCTTCGTGCAACGTCTTGTTGCTACTGGTAAACCGAGCCCACCGTTTAGTCCTTGCAAGGACTCGTCCGTCACTACTCTGGCTAACGGCCGCTAG 1167 0.497 MDLTKVTLEIFSKLEHKWLSHCKDTSTTKTRILSIDGGGTTAIVAGAALIHLEDQIRLQTSDLHAQISDFFDIVAGTGIGAILAAMITAADSFGRPLYTAREAVKIITERNSELYKLKSAGIFRRRRSRRFSSKNMDNVLKQVFFRKEDARMLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSATPSHFKPFNFASVDEKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSFGNGSSNSKTYESRTCSTPSVVDIVLDGVSETIDQMLGNVFCWNRTDYVRIQAFGLGNEGVRKEGDVEEVVLKERGLESLPFGGKRLLTETNGNRIDSFVQRLVATGKPSPPFSPCKDSSVTTLANGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01428 388 Pfam Patatin-like phospholipase 33 236 IPR002641 GO:0006629
Vifa3g01428 388 Gene3D Cytosolic phospholipase A2 catalytic domain 17 369 - -
Vifa3g01428 388 PANTHER PATATIN-LIKE PROTEIN 6 1 367 - -
Vifa3g01428 388 SUPERFAMILY FabD/lysophospholipase-like 29 314 IPR016035 -
Vifa3g01428 388 CDD Pat17_PNPLA8_PNPLA9_like 32 340 - -
Vifa3g01428 388 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 33 237 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01428 Vifa-Chr3 372569730 372571160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01428 1 388 Acyl Lipid Metabolism Gene Families AT3G63200 68.782 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01428 - - gmx:100795441 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01428 3 372569730 372571160 Vifa3g01428 3 372569730 372571160 ECH
Vifa5g02553 5 849718444 849719716 Vifa3g01428 3 372569730 372571160 PCT