Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02541 ATGACAAAAACCACCACCGATCGAAATGGAGTCCGAGTCGTCGTCGTCGGAGACCGAGGCACCGGTAAATCAAGCCTGATAGCTGCTATAGCGTCGGACTCATTCCCGGAGTCAGTTCTTCCCGTGCTTCCGCCCACTCTCTTGCCCGCTGATTTTTTTCCCGATTACGTCCCCCTCACCGTGATCGATACATCCTCTAGCTTGGAGAAACAAAACAAGCGGAATAAAGAATTGAAAGCTGCTGATGTCGTGGTTTTAACATATGCTTGCAATGATTCTCAGTCCTTTTCGCGATTGAGTTCTTACTGGTTTCGGGAGCTGCACAAGTTAGAGGTGACAGTACCTGTAATTGTGGTTGGTTGTAAGCTTGACTTGCGAGACGAAAGCCAACAAGTAAGCTTAGAGCGGCTTTTGGAACAGCTTCTATTAGAGTTCAAGAATGTTGCCACCTGCATTGAATGCTCCGCAGCAACGCTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCTGTACTGCATCCAGTAGATCCATTGTTTGATCATGAAAGTCAAGCTTTAACAGATCAATGTGTTAGGGCGTTGAGAAGAATATTTGTTCTTTGTGACCGTGACATGGATGATGCCCTCAATGATGCAGAACTAAACGATTTTCAGGTTAGATGTTTCAATGCACCTTTGCAGTCATCGGAAATAACAGATGTCAAAACAGTTGTACAGCAGAAAGTACCGGAAGGAATCAATTCGCACGGTCTTACTTTTCCAGGATTTTTGTATATACACAGTATGTTCTTAAGAAAAGGGCATCCGGAGACATTATGGGCCGTGTTAAGAAACTTTGGATATGATAATGATTTAAAACTGAAGGATAATTTCCTTCCTGTTCCAGCTAAGATTGCTCCTGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGAATATTCCGACTATTGGATACCGATAAAGATCGAGCCCTGAGACCGGCCGAAGTGGACAAGCTATTTTGTACTGCCCCAGAAAGTCCATGGAACGATGCTCCTTATAGCGATGCTGCGGAGAGAACTGATATGGGTTACATATCTCTTAACGGATTTCTATCCCAGTGGGCCTTTATGACATTACTCGATCCTCCATGTAGCCTGGCAAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCACTTCGTGTTACTCGTAAGAGATCAGTTGATCGTAAGAGACAGGCAACAGAAAGGAATGTGTTCCAATGCTACGTTTTTGGTTCTAAAAATGCTGGGAAATCTGCTCTGTTGGATGCATTATTGGGAAGGCCTTTCTCCAATAATTATACTCCAACTACAGTTGAGAAGTTTGCTGCAAATGGCATTCAATTATTAGGGGGAACTAGGAAAACTCTTGTATTACGGGAGATACCTGAGAGTGAAGTATTGAAAGTTCTTTCAAATCAGGATTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGTTCAGATGAATATTCATGGAAGAAATCCAGAGATCTGCTTGAGAAGGTTGCTGGGCAAGGTGATCTAACTGGTTATAGAGTTCCTTGCCTCCTCATTGCTACTAAGGATGATCTAACGCCATATCCAAGGGCACTCCAAGATTCAGTCAAGGTTACTCAGGAGTTGGGAATAGAGGCACCCATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTATATAATAAAATTGTAAGTGCTGCAGAACACCCTCATTTGAGCATTCCTGAAACTGAGGTTGGAAAGAAAAGAAAGCAGTACCACCGAATTGTTCAGAACTCTCTTATTTTTGCTTCAGTTGGGACCGCAATGGCAGTTGTTGGTTTGGCAGCATGCCGTGCATATGCAGTGAAGAGGAATTCATCTGCTTAG 1926 0.4294 MTKTTTDRNGVRVVVVGDRGTGKSSLIAAIASDSFPESVLPVLPPTLLPADFFPDYVPLTVIDTSSSLEKQNKRNKELKAADVVVLTYACNDSQSFSRLSSYWFRELHKLEVTVPVIVVGCKLDLRDESQQVSLERLLEQLLLEFKNVATCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDHESQALTDQCVRALRRIFVLCDRDMDDALNDAELNDFQVRCFNAPLQSSEITDVKTVVQQKVPEGINSHGLTFPGFLYIHSMFLRKGHPETLWAVLRNFGYDNDLKLKDNFLPVPAKIAPDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDAPYSDAAERTDMGYISLNGFLSQWAFMTLLDPPCSLANLIYIGYSGNPAAALRVTRKRSVDRKRQATERNVFQCYVFGSKNAGKSALLDALLGRPFSNNYTPTTVEKFAANGIQLLGGTRKTLVLREIPESEVLKVLSNQDYLAACDVAVFVYDSSDEYSWKKSRDLLEKVAGQGDLTGYRVPCLLIATKDDLTPYPRALQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVSAAEHPHLSIPETEVGKKRKQYHRIVQNSLIFASVGTAMAVVGLAACRAYAVKRNSSA 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02541 641 Gene3D - 7 178 IPR027417 -
Vifa5g02541 641 ProSiteProfiles Miro domain profile. 419 588 IPR020860 GO:0003924|GO:0005525
Vifa5g02541 641 SMART rab_sub_5 11 176 - -
Vifa5g02541 641 SUPERFAMILY EF-hand 180 375 IPR011992 -
Vifa5g02541 641 FunFam Mitochondrial Rho GTPase 183 287 - -
Vifa5g02541 641 Pfam Ras family 12 173 IPR001806 GO:0003924|GO:0005525
Vifa5g02541 641 Pfam Ras family 426 551 IPR001806 GO:0003924|GO:0005525
Vifa5g02541 641 PIRSF Miro 7 641 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vifa5g02541 641 FunFam Mitochondrial Rho GTPase 8 178 - -
Vifa5g02541 641 Pfam EF hand associated 348 415 IPR013566 -
Vifa5g02541 641 FunFam Mitochondrial Rho GTPase 289 479 - -
Vifa5g02541 641 Pfam EF hand associated 227 310 IPR013567 -
Vifa5g02541 641 ProSiteProfiles Miro domain profile. 8 175 IPR020860 GO:0003924|GO:0005525
Vifa5g02541 641 PRINTS Transforming protein P21 ras signature 151 173 - -
Vifa5g02541 641 PRINTS Transforming protein P21 ras signature 11 32 - -
Vifa5g02541 641 PRINTS Transforming protein P21 ras signature 112 125 - -
Vifa5g02541 641 FunFam Mitochondrial Rho GTPase 486 587 - -
Vifa5g02541 641 Gene3D - 183 287 - -
Vifa5g02541 641 Gene3D - 289 479 - -
Vifa5g02541 641 SMART ras_sub_4 8 176 - -
Vifa5g02541 641 Gene3D - 486 586 IPR027417 -
Vifa5g02541 641 ProSiteProfiles small GTPase Rab1 family profile. 5 203 - -
Vifa5g02541 641 ProSitePatterns EF-hand calcium-binding domain. 204 216 IPR018247 -
Vifa5g02541 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 208 IPR027417 -
Vifa5g02541 641 CDD Miro2 418 600 - -
Vifa5g02541 641 SMART rho_sub_3 13 176 IPR001806 GO:0003924|GO:0005525
Vifa5g02541 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 592 IPR027417 -
Vifa5g02541 641 PANTHER RHO FAMILY GTPASE 423 585 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02541 Vifa-Chr5 842647278 842658012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02541 8 639 EF-hand Containing Proteins AT3G63150 58.544 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02541 K07870 - gmx:100803790 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02541 5 842647278 842658012 Vifa3g01433 3 374561740 374572791 PCT