Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01433 ATGGCATTTCGCTCCAAATCCACCACCTTTCCCAAGGAAGTCACAGTCCTCGTTATCGGTGACAAATCCACCGGAAAATCCACCCTCATTTCCGCCATGGCTTCCGATTCTTTCTCCTCCACGGTTCCTCCGATGCTTCCACCCACTCGTTTGCCTCCTAACTCCTTCACCGATTCCACTCCTCTCGTCGTCATTGACACACCTTCAAGTGTGGTACAACAAGGTAAGCTTAGTGAAGAATTGAAGCGTGCTGATTCGGTGGTTGTAACCTATGCTTGTGATGATAGCGTGAGTTTTGAGCGTGTGAGTTCTTACTGGTTGCCTGAATTGCAGAAGCTTGAGGTGAAGGCACCTGTGCTTGTGGTTGGTTGTAAGCTTGATCTTCGCAATGAAAGAATGCAAGTTAGCTTAGCGAGTCTCACCACAGGTATCATGAACCAATTCAAAGAAGTTGTTACCTGTATTGAATGCTCTGCAGCTACACTTTATCAGGTTCCTGAAGTTTTTTATTTTGCACAAAAATCGGCACTTCATCCTGTGGATCCTTTGTTCGATTATGATTCAAATGCTTTAACAGATCGGTGTGTAAGGGCGTTAAGGAGGATTTTTAATCTTTTTGATTTCAATCTGGATGGCATCTTCACTGATCGTGATCTATACGAGTTTCAGACTAGATCCTTCGGTGCAGAACTTCTGCAGTCTGACATAGATCAGATCAAAACAATGGTAGAGCAGAATGTCCCTGAAGGAGTCAATTCTCATGGTCTTACTTTTCGTGGCTTCATTGAAATCCATAATATGTTTCTAAAGAAAGGGCGACCAGAGACATTCTGGGCAGTTCTAAGAAAATTTGGATATGGTAACGATTTAAAATTGCGGGATGATTTTCTTCCTGTTCCATCTAAGGCTTCTGATCAGAGTGTGGAGCTGAGCGGTGCAGCCATAGAGTTTCTGAAAGGTGTCTTTAGATTGTTAGATACGGATAAGGATCAATTACTACGGCCTGCAGAAATTGATAAACTATTTGACGCTGCTCCAGAAAGTCCGTGGAAGGATGCTCCATATAAGGATGCAGCTGAGACAACTGAAATGGGTTCTATAACTTTAAACGGATTTTTGTCTCAGTGGGCCCTTATGACTTTACTGGATCCAAAATATAGCTTGGCCAATTTGATTTACACCGGATGTAAACTTAAGCCTGCTGCAGCACTCCGTGTCACTCCTAGAAGATCAGAAGAACGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCAGGAAAATCTGCTTTTTTATTTTCATTATTGGGAAGGTCTTTCTCAGATTTCTATACTCCGACAACTGTTGAGCAGTATGCAGCAAACAACATTGAATTAACAAAGGGAACTAAGAAAACTCTCATATTGCGTGAGATTCCAGAGGATGAAGTATCAAGTTTTTTATCAAAAAAGGATTGTCTTGCTGCATGTGATGTAGCTGCTTTTGTACATGACAGCTCAGATGGATATTCATGGAAGAAATCCATAGATTTGCTCGAGAAAGTTGTTAACCAAGGAGAGCTAACTGGTCACAAATTTCCTTGCCTCCTCATTGCTGCTAAGGATGACTTAGCTCCATTCCCAAGGGCAGTATTAGATTCATATAAGGTTGCTCAGGAATTGAAAATAGATGCACCTATTCGAGTGAGTATGAGATCAGGTGATTCAAACGATGTCTATAGTAAGATTGTCAATGCTGCAGAACACCCTCATTTAAGTATTCCAGAAACTGAGTTTGTGAGGAAAAGAAAGCAACAACAGCAACTTCTCCACTCTTTCATTTTTGCCTTAGCTGGGGCTGCTATGGCATTTGCGGGTTTGACAGTTCGTCGTGTACGTGCAAATAAGAATTCTTCTTAG 1923 0.416 MAFRSKSTTFPKEVTVLVIGDKSTGKSTLISAMASDSFSSTVPPMLPPTRLPPNSFTDSTPLVVIDTPSSVVQQGKLSEELKRADSVVVTYACDDSVSFERVSSYWLPELQKLEVKAPVLVVGCKLDLRNERMQVSLASLTTGIMNQFKEVVTCIECSAATLYQVPEVFYFAQKSALHPVDPLFDYDSNALTDRCVRALRRIFNLFDFNLDGIFTDRDLYEFQTRSFGAELLQSDIDQIKTMVEQNVPEGVNSHGLTFRGFIEIHNMFLKKGRPETFWAVLRKFGYGNDLKLRDDFLPVPSKASDQSVELSGAAIEFLKGVFRLLDTDKDQLLRPAEIDKLFDAAPESPWKDAPYKDAAETTEMGSITLNGFLSQWALMTLLDPKYSLANLIYTGCKLKPAAALRVTPRRSEERKKQKTERNVFQCYVFGSKNAGKSAFLFSLLGRSFSDFYTPTTVEQYAANNIELTKGTKKTLILREIPEDEVSSFLSKKDCLAACDVAAFVHDSSDGYSWKKSIDLLEKVVNQGELTGHKFPCLLIAAKDDLAPFPRAVLDSYKVAQELKIDAPIRVSMRSGDSNDVYSKIVNAAEHPHLSIPETEFVRKRKQQQQLLHSFIFALAGAAMAFAGLTVRRVRANKNSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01433 640 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Vifa3g01433 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Vifa3g01433 640 PIRSF Miro 10 640 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Vifa3g01433 640 SMART rab_sub_5 14 179 - -
Vifa3g01433 640 Gene3D - 186 290 - -
Vifa3g01433 640 Gene3D - 11 181 IPR027417 -
Vifa3g01433 640 CDD Miro2 420 600 - -
Vifa3g01433 640 PRINTS Transforming protein P21 ras signature 14 35 - -
Vifa3g01433 640 PRINTS Transforming protein P21 ras signature 154 176 - -
Vifa3g01433 640 PRINTS Transforming protein P21 ras signature 115 128 - -
Vifa3g01433 640 Pfam EF hand associated 231 313 IPR013567 -
Vifa3g01433 640 Gene3D - 488 588 IPR027417 -
Vifa3g01433 640 Pfam Ras family 16 175 IPR001806 GO:0003924|GO:0005525
Vifa3g01433 640 PANTHER RHO FAMILY GTPASE 14 178 IPR003578 GO:0005525|GO:0007264
Vifa3g01433 640 SMART rho_sub_3 16 179 IPR001806 GO:0003924|GO:0005525
Vifa3g01433 640 Pfam EF hand associated 350 417 IPR013566 -
Vifa3g01433 640 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Vifa3g01433 640 ProSiteProfiles Miro domain profile. 11 178 IPR020860 GO:0003924|GO:0005525
Vifa3g01433 640 FunFam Mitochondrial Rho GTPase 186 290 - -
Vifa3g01433 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 203 IPR027417 -
Vifa3g01433 640 Gene3D - 292 481 - -
Vifa3g01433 640 SUPERFAMILY EF-hand 189 377 IPR011992 -
Vifa3g01433 640 FunFam Mitochondrial Rho GTPase 488 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01433 Vifa-Chr3 374561740 374572791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01433 16 639 EF-hand Containing Proteins AT3G63150 53.907 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01433 K07870 - gmx:100806983 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02541 5 842647278 842658012 Vifa3g01433 3 374561740 374572791 PCT