Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02506 ATGAGTTTCCTCAAATCCGTTTTCTCCGACGACCCCAACCCTTCACCACCCGAATCCAACAATGCTCCCCACCGCGAGTCGCCAAGCGCGCCGCGCAGTCCTTCCGCCGCGTGGAAGAATCTCGGCAACCTAATCAAAACCCTCGGCCAAAAATCAGAAACCGTCATCGATATCTACCGCCGCGATCTTCATGAATTCGGCACCGGTTTGAAGAAAGAGATAGAGGTCGCTCACGGCTCTCTTGAAACGGTGGGACACGTCATCGATCGATTCGGGAATACCGTGATTAAAGGAACTGCGCAGATTATATCTCATGGCAAAGACGCAATCCTCGATTCCGATTCCGATTCAGACAACAGCAATAACAGTAAGAATAAGAAACAGAGTGGTTCAAATTCGAAATTATATAATAGATTTGATTCTCAGGTTCGTGCGATTCAGGGTGATGCTAAGACTTTTATAGAAGAACCGTTTGATTTGGAGCGTTATAATAAGTGGAAATTGGAGTTTTCCTTGGAAGGGAAAAGTGATGAAATGGAAGGGTTTCTAAAAGGGAATGAGGCTATGGAGAGTGTTTATAAGAGGGTGGTTCCTAATGTTGTTGATAGTGAAACTTTTTGGTTTAGGTATTATTATAAGCTTTATAAGGTTAAGAAAGCCGAGGATGTTAGGGCTAGGCTTGTGAAGCGAATGTCGAGGGAAGAGGATGAAGTGTTGAGCTGGGATGTTGAAGATGATGATCGTGATGATCATGATGTTCATGATGATGATGAGCATGATGATGATGATGAGCATGATGATGATGATGATGATGATGATGATAATGATGAGAAGAATGGGAGAGAGGGTGGTGGGGATTTTGATGATAGTGGTGTCGTGGAAATTAAGGGATTAGATGATTCTGGTGAGGAAGAGTCTAAGGTTGAAAAGCGAAATAGTTTATCAGAAAACAAGGTGAAGGATGAATCAAAAGTTGATGAGGATTTGGAGGTTGTTCAAGAGAAGGGTGATGGTGATGCAAGACAAGTTGATGATGTTAAGGATTCTGTAGTTGATTCGGATAAGAAAATGACAGTGGAGAGTAATGTTGGCGATGGAAAGGAGGGGCGAGAGGAAGTGGAGGAGAAAGATCTTGAGTGGGATGAGATTGAGGAACTTGATAGATTTGATGAAAAGAAGGCAGTGGGGAGTGGTAGTCCAAGCAAAATTGATATACGGAAGCGGTTGAGTTCGGCCGTGGAAGAAGAAGACTTGAGTTGGAATATTGAAGATGATGATGATGATGATGAGCTTACCAAGGCTTGA 1305 0.433 MSFLKSVFSDDPNPSPPESNNAPHRESPSAPRSPSAAWKNLGNLIKTLGQKSETVIDIYRRDLHEFGTGLKKEIEVAHGSLETVGHVIDRFGNTVIKGTAQIISHGKDAILDSDSDSDNSNNSKNKKQSGSNSKLYNRFDSQVRAIQGDAKTFIEEPFDLERYNKWKLEFSLEGKSDEMEGFLKGNEAMESVYKRVVPNVVDSETFWFRYYYKLYKVKKAEDVRARLVKRMSREEDEVLSWDVEDDDRDDHDVHDDDEHDDDDEHDDDDDDDDDNDEKNGREGGGDFDDSGVVEIKGLDDSGEEESKVEKRNSLSENKVKDESKVDEDLEVVQEKGDGDARQVDDVKDSVVDSDKKMTVESNVGDGKEGREEVEEKDLEWDEIEELDRFDEKKAVGSGSPSKIDIRKRLSSAVEEEDLSWNIEDDDDDDELTKA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02506 434 PANTHER SYNAPSE-ASSOCIATED PROTEIN 11 381 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 1 37 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 1 15 - -
Vifa5g02506 434 SUPERFAMILY BSD domain-like 135 223 IPR035925 -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 22 36 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 417 434 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 278 374 - -
Vifa5g02506 434 Pfam BSD domain 166 222 IPR005607 -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 410 434 - -
Vifa5g02506 434 SMART wurzfinal6 166 218 IPR005607 -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 242 277 - -
Vifa5g02506 434 ProSiteProfiles BSD domain profile. 166 218 IPR005607 -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 115 134 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 111 134 - -
Vifa5g02506 434 MobiDBLite consensus disorder prediction 242 376 - -
Vifa5g02506 434 Coils Coil 217 237 - -
Vifa5g02506 434 Gene3D BSD domain 127 228 IPR035925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02506 Vifa-Chr5 831526764 831528068 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02506 - - mtr:25499068 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02506 5 831526764 831528068 Vifa5g02506 5 831526764 831528068 ECH
Vifa5g02506 5 831526764 831528068 Vifa3g02291 3 578254943 578256322 PCT