Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02291 ATGAATTTCTTCAAATCCGTTTTCTCCGACGATCCAGCTCCTCCTCAACCCGAACCCAACCATGCAAACCCCATTCCCGATTCCGGTGACGGCGACGCTTGGAACTTCGGAGGACTCATCAAAACGCTCACATCCAAATCCGAATCCATAATCGAGACGTACCGTCGCGATCTACAAGAATTCAGCACCGGCTTGAAGAGCGAGATCGAAGTCGCTCAAGATTCGGTTGGTGAGATCGGTAGCACCGTCATTAAATCAACGGCTCAGATTATATCTCAAGGGAAGGAAGCCATCCTCGCCGTTAATCTCGATTCAGATTCCGATAATGGTACCGCCCCGGTAAATCGCGATTCGGGCCGAGTGGATTCGAAGCGGTATAGTAGGTTTGATGCTCAGGTTAGTGCTATTCAGGGGGATGTGAGTACTTACACTGAGGTGCCTGAGGATTTGAATGAATTCAATGAGTGGAAATTAGGGTTTGGATTGGATGGGAAGAGTGATGAAATGGAGAGTCTTTTTAGGGAGAATGATGCAATGGAGAGTGTTTATAGAAAGGTTGTTCCGAATGCTGTTGATCATGAAACTTTCTGGTATAGGTATTATTATAAGGTTTATAGACTCAAGAAAGCGAAAGATGTTAGGGCTAGGCTTGTTAGAAGAATATCCAAGGAAGAAGAGGAATTGAGTTGGGATGTTGAAGATGATGATGAGGAGAATGAAGGTGAAGTTAAACCCGAGATTGTGATGAATAAGGAAATTGGGGGTGAAAATTTGGGGAAAAGTGTAGATGCTGATTTGAAAAATGGTGCCTCTGGCTCTGATGCTAGTGATGAGAAGAGATTGAGTGTGGAAGAGGTGTGTAATTCAGGTTCTAAAGTAGAAAAGAGAGACAATTCAATGCAAAGTAATGAACATGGTAATGAGATGGGTAAGTCTGTTGAAGAATCATTGGTTGTTGAGAAAGCTGAAGTTGTTCATGAGATGGGTGGTGGAAGTGAGGAAAAGAATGAGGATGGTGGCATTGATAAAGCATCAAAGTTGGAAGTGGGTGATGCTGCAAACAAGGATGGTTCGGCAGCTGTGTCCGATGAGAAAGTGGTAATACTGGAAACAAAGGCTTCTGATGTAAAGTCTCCGAGTAAGAATAATGAGTCATCGGTGGTTGAAAGTCAGCTCATGGAAAACGAGGAGGAAGAGGATCTTGAGTGGGATGATATAGAGGATCTTAGCAGTATTGATGATAAGAAAGCAGCTCAATCCGAGAGTCAGAGTGGTAGCACCAGCAAGGTTGATTTGCTGAAGCGTCTTAGTACTGCAGAAGAAGATGAAGTCTTGAGTTGGGACATTGAGGATGACGACAATGAGCCTGTTAAGCCTTGA 1380 0.4399 MNFFKSVFSDDPAPPQPEPNHANPIPDSGDGDAWNFGGLIKTLTSKSESIIETYRRDLQEFSTGLKSEIEVAQDSVGEIGSTVIKSTAQIISQGKEAILAVNLDSDSDNGTAPVNRDSGRVDSKRYSRFDAQVSAIQGDVSTYTEVPEDLNEFNEWKLGFGLDGKSDEMESLFRENDAMESVYRKVVPNAVDHETFWYRYYYKVYRLKKAKDVRARLVRRISKEEEELSWDVEDDDEENEGEVKPEIVMNKEIGGENLGKSVDADLKNGASGSDASDEKRLSVEEVCNSGSKVEKRDNSMQSNEHGNEMGKSVEESLVVEKAEVVHEMGGGSEEKNEDGGIDKASKLEVGDAANKDGSAAVSDEKVVILETKASDVKSPSKNNESSVVESQLMENEEEEDLEWDDIEDLSSIDDKKAAQSESQSGSTSKVDLLKRLSTAEEDEVLSWDIEDDDNEPVKP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02291 459 ProSiteProfiles BSD domain profile. 156 208 IPR005607 -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 258 432 - -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 416 432 - -
Vifa3g02291 459 Coils Coil 207 227 - -
Vifa3g02291 459 Gene3D BSD domain 117 219 IPR035925 -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g02291 459 PANTHER SYNAPSE-ASSOCIATED PROTEIN 16 404 - -
Vifa3g02291 459 SMART wurzfinal6 156 208 IPR005607 -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 375 390 - -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 272 350 - -
Vifa3g02291 459 Pfam BSD domain 156 211 IPR005607 -
Vifa3g02291 459 SUPERFAMILY BSD domain-like 126 212 IPR035925 -
Vifa3g02291 459 MobiDBLite consensus disorder prediction 391 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02291 Vifa-Chr3 578254943 578256322 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02291 - - gmx:100792113 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02291 3 578254943 578256322 Vifa3g02291 3 578254943 578256322 ECH
Vifa5g02506 5 831526764 831528068 Vifa3g02291 3 578254943 578256322 PCT