Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02497 ATGAAGATTTCTACGTTTTCTTTGATTCTTTTGTGCTTCTTTCAATCCACACGAGCAATCTTAAATCCTATTGATTTCTTAGCATTGCAATCTATTCGAAGATCTTTGCACGATGTTCCTGGTTCCAAATTCTTTTCATCTTGGGACTTCACAGACGATCCTTGCAACTTCGCCGGAGTTTTTTGTGTTTCCGATAAAGTTGTAGCTCTCAATCTCGGTGAACCGAGAGCCGGTTCTCCTGGTTTAACCGGGAAAATAGACACCGCTGTTGGAAAACTCTCTTCTCTCGTCGACTTAACGGTTTCTGCAGGTAGAGTTTACGGTCCTCTTCCTCAGTCCATTTCCAAATTGAACAACCTCAAGTTTCTCGGCATCAGCCGGAATTTCATCTCCGGCGAGATTCCGGCTGGACTTGGTCAGCTTCGCAATCTCAGAACAATCGATCTAAGCTACAATCAGCTAGCCGGAGCTATTCCTCCGTCAATCGGAAAATTACCGAATCTAAACAACCTGATGCTCCGTCATAACCGTCTCACCGGTTCAATTCCATCTTTCGCTTCAGCAAAAAACCTAAACCGGCTCGATCTAAAACACAACTCACTCACCGGTTCACTCACTCCCGATTCTCTCCCTTCCTCACTACAATACCTCTCTCTATCATGGAACCAGCTAACCGGAACAGTGGACCGGGTTTTATACAAACTAAACCGCCTCAACTATCTCGATCTAAGCTTCAACCGGTTCACCGGTTCAATCCCGCGTCAACTATTCTCATTCCCGCTAACCAACTTACAGTTAGAAAGAAACCAACTATACGGTCCGGTTGAACCGTTTAACGAAGTTACAATCCAAACCGTTGATCTCAGTTACAACAAACTATCAGGTGAAATATCACCTTTGTTATCTAGTGTGCACAATTTGTATCTAAACAACAACGCTTTCACCGGCGAAGTTCCCGGTAGTTTTGTTGAACGGTTGTTAGCAGCGAATATTCAGATACTGTATTTGCAGCATAATTATCTTACAGGAATTGTGATAAATCCAACGGCGGAGATTCCGTTGAGCAGTTCTCTTTGTTTACAGTATAACTGTATGGTTCCTCCCATTCAGATGACGTGTCCTTCCAAAGCTGGTTACCTGAAAATTAGACCGGCTCAGCAGTGTAACCATTACCAATACCATTGA 1185 0.4363 MKISTFSLILLCFFQSTRAILNPIDFLALQSIRRSLHDVPGSKFFSSWDFTDDPCNFAGVFCVSDKVVALNLGEPRAGSPGLTGKIDTAVGKLSSLVDLTVSAGRVYGPLPQSISKLNNLKFLGISRNFISGEIPAGLGQLRNLRTIDLSYNQLAGAIPPSIGKLPNLNNLMLRHNRLTGSIPSFASAKNLNRLDLKHNSLTGSLTPDSLPSSLQYLSLSWNQLTGTVDRVLYKLNRLNYLDLSFNRFTGSIPRQLFSFPLTNLQLERNQLYGPVEPFNEVTIQTVDLSYNKLSGEISPLLSSVHNLYLNNNAFTGEVPGSFVERLLAANIQILYLQHNYLTGIVINPTAEIPLSSSLCLQYNCMVPPIQMTCPSKAGYLKIRPAQQCNHYQYH 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02497 394 FunFam Nuclear pore complex protein NUP107 24 184 - -
Vifa5g02497 394 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515
Vifa5g02497 394 SUPERFAMILY L domain-like 46 374 - -
Vifa5g02497 394 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 390 - -
Vifa5g02497 394 Gene3D Ribonuclease Inhibitor 25 185 IPR032675 -
Vifa5g02497 394 Gene3D Ribonuclease Inhibitor 186 377 IPR032675 -
Vifa5g02497 394 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Vifa5g02497 394 SMART LRR_typ_2 235 259 IPR003591 -
Vifa5g02497 394 SMART LRR_typ_2 141 164 IPR003591 -
Vifa5g02497 394 SMART LRR_typ_2 165 189 IPR003591 -
Vifa5g02497 394 Pfam Leucine rich repeat 166 224 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02497 Vifa-Chr5 828532341 828533525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02497 28 345 Receptor kinase-like Gene Family AT5G62230 32.219 2.27e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02497 - - tpra:123917600 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02497 5 828532341 828533525 Vifa5g02497 5 828532341 828533525 ECH
Vifa5g02497 5 828532341 828533525 Vifa3g02270 3 573766927 573768123 PCT