Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02270 ATGGCGAAGCCAATGATTCTTTCATGCTTTCTTCTGTTTTGCTTCTGTTTATTACAAACACAGGTTATAGTTGCTATTTTGGATCCAACTGATTTTCTAGCTTTGCAATCTATTCGGAAATCTCTAGAAGACATGCCTGGTTCTGATTTCTTTTCTTCATGGGATTTCACTGCTGATCCTTGTAACTTCTCCGGCGTCTTATGTGATTCCGATAAGGTTATCGCACTCAACCTCGGTGATCCGAGAGCCGGTGCAACGGGTTTAACGGGACGCCTTGACGCCGCCATTGGTAAACTCTCTTCTCTAGTCGAGTTTACCGTTGTCCCGGGAAGGATATACGGTACTCTGCCTCAAACCGTTTCCAATTTGAAGAGCCTCAAGTTTCTTGCTATTAACAGAAACTTCATCTCCGGCGAGATTCCGGTGGAGTTAGGTGAGTTACGCAGTCTTAAAACTATTGATCTCAGTTACAACCAGGTCACCGGAAAAATTCCTCCGACGGTCGGATCATTGCCGGGGCTAACAAATCTCATCCTCTGCCATAACCGTCTCACCGGTTCTATCCCTCGGTTTGATTCTCAGAGCTTGACCCGGTTGGACCTAAAGCACAACACTCTCACCGGTTCACTTGGTCCAAACTCTCTCCCTCCGTCACTTCAGTATCTCTCCTTGTCCTGGAATCAACTCACCGGCTCAATGGACCGGGTTCTGACTCACCTCGAGGAGCTAAACTATTTAGACCTTAGTTTAAACCAGTTCACTGGACCCGTTCCCGGTCGGATATTTTCATTTCCACTAAGCAATCTCCAATTACAAAGAAACCAGTTCTCCGGTTCAGTTGAACCAGTGGATCAAGTTGCAATTCCAACCGTTGATCTAAGTTTCAACAGATTATCCGGTCAGATATCACCAATGCTAGCTAGCGTGCAGAATCTTTACCTGAACAACAACCGGTTCTCGGGTCGGGTACCGGCTAGCTTTGTGGATCGGTTATTGGATGCGAGTATTCAGATATTGTATTTGCAGCATAACTATCTAACGGGGATTGAGATTAGTCCAACGGCTGTGATTCCAGAGAGAAGCTCATTGTGTATGCAGTATAATTGCATGGTCCCGCCCGTAGAGACTCCCTGCCCTTTGAGGGCTGGAAAACAGAAAACAAGACCTACCACACAGTGCAACCAGTTTAAGGGCTGA 1197 0.4637 MAKPMILSCFLLFCFCLLQTQVIVAILDPTDFLALQSIRKSLEDMPGSDFFSSWDFTADPCNFSGVLCDSDKVIALNLGDPRAGATGLTGRLDAAIGKLSSLVEFTVVPGRIYGTLPQTVSNLKSLKFLAINRNFISGEIPVELGELRSLKTIDLSYNQVTGKIPPTVGSLPGLTNLILCHNRLTGSIPRFDSQSLTRLDLKHNTLTGSLGPNSLPPSLQYLSLSWNQLTGSMDRVLTHLEELNYLDLSLNQFTGPVPGRIFSFPLSNLQLQRNQFSGSVEPVDQVAIPTVDLSFNRLSGQISPMLASVQNLYLNNNRFSGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCMQYNCMVPPVETPCPLRAGKQKTRPTTQCNQFKG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02270 398 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 395 - -
Vifa3g02270 398 Pfam Leucine Rich repeat 193 208 IPR001611 GO:0005515
Vifa3g02270 398 Pfam Leucine Rich repeat 217 231 IPR001611 GO:0005515
Vifa3g02270 398 Pfam Leucine Rich repeat 148 163 IPR001611 GO:0005515
Vifa3g02270 398 SUPERFAMILY L domain-like 28 370 - -
Vifa3g02270 398 FunFam Nuclear pore complex protein NUP107 29 190 - -
Vifa3g02270 398 Gene3D Ribonuclease Inhibitor 193 371 IPR032675 -
Vifa3g02270 398 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vifa3g02270 398 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02270 Vifa-Chr3 573766927 573768123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02270 34 348 Receptor kinase-like Gene Family AT5G62230 31.804 3.09e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02270 - - gmx:100800224 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02270 3 573766927 573768123 Vifa3g02270 3 573766927 573768123 ECH
Vifa5g02497 5 828532341 828533525 Vifa3g02270 3 573766927 573768123 PCT