Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02368 ATGGGAGAAGCACCAGCATTCCTTGTTGATGATGACCTTCAACATGGGCCTCTTAATGGCCTTGAATTAACAAATGAAACTTGCAAAACAACTACCGTTGTCGGCGACAAAACGTATGTCACTGTTGGAGCTGATGATGGAACTTTGTCCATTGACGTTCAAATTTTTGACCCTAGTCTTGGAGAATGGGTTTATCCAACTGTGCTAGGAACTAAACCCTTGTCATGCAAAGGCCACTCGACTGTGGTTTTTGAGAAGCGGATTCTTGTTCTTAAGAAGGGCTCTAAACCAGATGATCAAATATGGTTCCTAGAGGTGGACACTGAATATGTTAGGCAGCAGCGGAAAAAATTGGGGACAGAGGTTGTTGCATGGAGTAAGGGTGTGATTGGCAATGCGGAGAAACCTATTGTTATTAGTGGTCCTTCTGGAGTCGGTAAAGGAACGCTGATATCAATGCTCATGAAAGAATTCCCATCGATGTTTGGTTTTTCTGTGAGCCACACCACTCGTGCTCCACGAGATATGGAGAAAAATGGTGTCCATTACCATTTTACTGAGAAGAGTGTGATGGAGAAAGAGATTAAAAATGGAAAGTTTCTCGAGTTTGCTTCTGTCCATGGTAATTTGTATGGGACCAGTGTTGAAGCTGTTGAAGTTGTGGCAGATGCAGGAAAAAGATGCATTCTCGATATCGATGTTCAAGGAGCAAGATCAGTGAAGGCTAGTTCTCTTGAAGCCATATTCATCTTTATCTGCCCCCCATCAATGGAAGAGCTTGAGAAGCGCCTTCGTGACAGGGGGACTGAGACAGAGGAACAGATCCTTAAGCGACTGCGTAATGCCTCGGCTGAAATCGAACAAGGGAAGTCTTCCAATATATTTGATTTCATCTTATACAATGACAATCTTGAGGAGTCTTATGAGAGACTTAAGAAATTATTGGGTCTTAACGGTTTTGTCACTTCTCAACCGAAATCAGCTGCATCGAGAGAGATTAATCTACCAATGGATCATTCTGTGTCGAAACTCGATGACAAAATCATCATAAACTGCATCTCTTCTGGACCAGATAAGGAGTCAAAGAATTTGATCATGTTAGATGTTTCCTCACTAAAAGGAGGTGCACCTGGAAGGACAAGAGGGCTTGATTTTCATGTGATAGGCTCTATGGATCAACTTAGCTAA 1188 0.4251 MGEAPAFLVDDDLQHGPLNGLELTNETCKTTTVVGDKTYVTVGADDGTLSIDVQIFDPSLGEWVYPTVLGTKPLSCKGHSTVVFEKRILVLKKGSKPDDQIWFLEVDTEYVRQQRKKLGTEVVAWSKGVIGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRDMEKNGVHYHFTEKSVMEKEIKNGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVKASSLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNASAEIEQGKSSNIFDFILYNDNLEESYERLKKLLGLNGFVTSQPKSAASREINLPMDHSVSKLDDKIIINCISSGPDKESKNLIMLDVSSLKGGAPGRTRGLDFHVIGSMDQLS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02368 395 Pfam Guanylate kinase 134 315 IPR008145 -
Vifa5g02368 395 NCBIfam guanylate kinase 135 315 IPR017665 GO:0004385|GO:0006163
Vifa5g02368 395 FunFam Guanylate kinase 2 127 319 - -
Vifa5g02368 395 CDD GMPK 136 312 - -
Vifa5g02368 395 ProSitePatterns Guanylate kinase-like signature. 169 186 IPR020590 -
Vifa5g02368 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 315 IPR027417 -
Vifa5g02368 395 Gene3D - 16 126 IPR015915 GO:0005515
Vifa5g02368 395 PANTHER GUANYLATE KINASE-RELATED 38 380 - -
Vifa5g02368 395 ProSiteProfiles Guanylate kinase-like domain profile. 134 316 IPR008144 -
Vifa5g02368 395 SUPERFAMILY Galactose oxidase, central domain 31 112 IPR011043 -
Vifa5g02368 395 Gene3D - 130 319 IPR027417 -
Vifa5g02368 395 Hamap Guanylate kinase [gmk]. 132 319 IPR017665 GO:0004385|GO:0006163
Vifa5g02368 395 SMART gk_7 133 319 IPR008145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02368 Vifa-Chr5 778517374 778519569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02368 K00942 - gmx:100808931 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02368 5 778517374 778519569 Vifa5g02368 5 778517374 778519569 ECH
Vifa5g02368 5 778517374 778519569 Vifa3g00520 3 88290209 88292459 PCT