Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00520 ATGGGAGAAGCACCAATACTCGTTCATCAAGACCAGCAGAATGGAGCTAGTAATGGTTCTGAATTAAAAGACGGAAATTTCCAAACAACTACCACCATTGGCGATAAAACGTATGTCATCGGTGGAGCTGATAGTGAAACTCTGTCCAGTGATGTTCGAGTTTTCGATAAGTGTCTCGGAGAATGGGTTAATCCAACTGTCTTAGGCACCAAACCCTTGTTATGTGAAGGTCACTCAGCAGTGTTTTTGAAAGACCGAATCGTAGTTCTTAAGAAGAATCTTAAGCCAGATGATCATACATGGTTTCTGGAGGTAGACACTCAATATGTCAGGCAACAGAAAAAGAAATTGGGGACTGAGGTTGTTGCATGGAGTAAGGGTGTGATAGGAAATGTTGAGAAACCTGTTGTTATTAGCGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCGGTGCTCATGAAGGAATTTCCATCCATGTTTGGTTTCTCAGTGAGCCACACAACCCGTGCCGCAAGAGGAAAGGAGAAAGATGGTGTCCATTATCATTTTACTGAGAAGAGTATTATGGAGAGAGAGATCCAAGATGGAAAGTTTCTTGAGTTTGCTTCTGTGCATGGTAATTTGTATGGGACCAGTGTTGAGGCTGTTGAAATGGTATCAGATGCAGGGAAAAGGTGTATTCTTGATATTGATGTTCAAGGGGCAAGATCTGTGAGGGCTAGTTATCTTGAAGCTATATTCATCTTTATCTGTCCCCCATCAATGGAAGAGCTGGAGAAGCGTCTTCGGAAAAGAGGAACGGAGACAGAAGAACAGGTCTTAAAAAGATTACGAAATGCTCAGGCCGAGATTGAGCAAGGGAAGTCATCAGGCATATTTGATTTCATCTTATACAACGACAAACTTGACGTGTGCTATGACAGTCTAAAGAAATTATTGGGACATGATGGTTATGTCACTCCTCCACCTAATCCAGCTGCAAGAGCGTTCAATCTCCCAACGGATTATTCAGTAACCAAACTTAATGACAAAATCATCATATACTGCAACTCTTCCGAACTAGAGAACATGATAATGTTAGACGTGTCCTCGCTTAAAGGCGGTGCACCTGGCAGGACAAGAGGGCTGGATTTCATTCAGATGGAACAGCTTCACATTCAATGA 1167 0.4233 MGEAPILVHQDQQNGASNGSELKDGNFQTTTTIGDKTYVIGGADSETLSSDVRVFDKCLGEWVNPTVLGTKPLLCEGHSAVFLKDRIVVLKKNLKPDDHTWFLEVDTQYVRQQKKKLGTEVVAWSKGVIGNVEKPVVISGPSGVGKGTLISVLMKEFPSMFGFSVSHTTRAARGKEKDGVHYHFTEKSIMEREIQDGKFLEFASVHGNLYGTSVEAVEMVSDAGKRCILDIDVQGARSVRASYLEAIFIFICPPSMEELEKRLRKRGTETEEQVLKRLRNAQAEIEQGKSSGIFDFILYNDKLDVCYDSLKKLLGHDGYVTPPPNPAARAFNLPTDYSVTKLNDKIIIYCNSSELENMIMLDVSSLKGGAPGRTRGLDFIQMEQLHIQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00520 388 FunFam Guanylate kinase 2 126 318 - -
Vifa3g00520 388 Pfam Guanylate kinase 133 315 IPR008145 -
Vifa3g00520 388 Gene3D - 23 123 IPR015915 GO:0005515
Vifa3g00520 388 SMART gk_7 132 318 IPR008145 -
Vifa3g00520 388 SUPERFAMILY Galactose oxidase, central domain 21 113 IPR011043 -
Vifa3g00520 388 MobiDBLite consensus disorder prediction 10 26 - -
Vifa3g00520 388 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Vifa3g00520 388 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Vifa3g00520 388 PANTHER GUANYLATE KINASE-RELATED 29 326 - -
Vifa3g00520 388 CDD GMPK 135 311 - -
Vifa3g00520 388 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g00520 388 Pfam Kelch motif 30 63 IPR006652 GO:0005515
Vifa3g00520 388 Gene3D - 130 320 IPR027417 -
Vifa3g00520 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Vifa3g00520 388 NCBIfam guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00520 Vifa-Chr3 88290209 88292459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00520 K00942 - gmx:100527163 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00520 3 88290209 88292459 Vifa3g00520 3 88290209 88292459 ECH
Vifa5g02368 5 778517374 778519569 Vifa3g00520 3 88290209 88292459 PCT