Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02357 ATGACGGTGACACCTAAAATCTCTGTTAACGATGGAAACTTGGTTGTCCATGGCAAGACCATACTTAAAGGAGTTCCAGAAAACGTCGTGCTTACTCCAGGTTCCGGCAACGGTCTTGTTACCGGCGGCGCATTCATCGGTGCAACCGCTTCTGATTCCAAAAGCCTCCATGTTTTTCCCATCGGAATCTTAGAGGGGCTCCGGTTTGTGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGAAATTGTGGGAGGGATATTCCTTTGGAGACTCAGTTCATGCTTATAGAGAGCAAAGACAGTGAAGGGGAAGCGGAGGAGGCGGAAAAATCTCCTGTTATTTACACTGTTTTGCTTCCTTTATTGGAAGGTCCATTTCGATCTGTTCTACAAGGAAATGAGAAGAGCGAGATCGAGATTTGCTTTGAGAGTGTTCCTTCCAGTCTGCCAAAAATGCGGGGTGGAGCTGTCATCATTAGGGATCATGCTGTCGAGACTAATCAAGGCCTTCACATGGTTTACATGCATGCTGGCACCAACCCTTTTGAAGTCATCAACCAAGCTGTCAAAGCTGTGGAAAAGCACATGCAAACATTTCATCATCGTGAGAAGAAAAGACTGCCATCTTTTCTTGACATGTTTGGTTGGTGCACATGGGATGCTTTCTATACTGATGTAACAGCTGAGGGTGTTGAACAAGGCCTGAAAAGTTTATCAGATGGAGGTACACCTCCGCGGTTTCTCATCATAGATGATGGCTGGCAACAGATTGAAAGTAAAGCAAAGGATCCTGGCTGTGTTGTGCAAGAAGGAGCACAGTTTGCTACTATGTTGACTGGTATTAAAGAGAATGCAAAATTTCACAAGAATAAAAATGGAGAGCACAGCGAACCGGCATCAGGTCTTAAACATCTTGTTGACGGAGTGAAGAAACATCACAATGTCAAAAATGTTTATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAACCCGCAGCAACTGGCATGGAACATTACGACACGGCTTTGGCATACCCGGTGCAATCGCCTGGAGTACTCGGAAATCAACCAGACATTGTCATGGACAGCTTGTCTGTACACGGTCTCGGTCTAGTACATCCAAAGAAGGTTTTCAACTTCTACAATGAGCTCCATGCTTACTTAGCTTCATGTGGAGTAGACGGTGTGAAGGTAGATGTTCAAAACATTATTGAAACCCTTGGTGCTGGACATGGTGGCCGAGTCTCACTTACACGCAGCTATCATCACGCTCTTGAAGCTTCCATTGCTCGTAACTTTTCCGACAATGGATGCATTGCGTGTATGTGCCACAACACTGATGGACTTTACAGTGCTAAGCAGACTGCTGTTGTGAGAGCTTCCGATGATTTTTACCCGCGTGATCCTGCTTCTCACACGATCCATATTTCATCTGTCGCATACAACTCCCTTTTTCTGGGAGAGTTCATGCAACCAGATTGGGACATGTTCCATAGTTTACATCCAGCAGCAGAGTATCACGCCGCAGCTCGTGCAATCGGTGGATGTCCGATTTATGTCAGTGATAAGCCAGGCAACCACAATTTTGATCTTCTTAAGAAGCTGGTTCTCTCTGATGGTTCGGTTCTCCGTGCTCAGTTACCTGGAAGGCCTACGCGTGATTCTCTATTTGTTGATCCGGCGAGAGATAGGACTAGTCTGCTTAAAATATGGAACATGAACAAATGTACTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGTTGGTGCAAGGTAGAGAAGAAAACTCGCATCCATGATATATCTCCCGGCACACTTACTAGCTCTGTTTGTGCCTCTGATGTTGATCTCATCAACCATGTAGCTGGTGCTGAATGGCATGGGGAGACTATTGTTTATGCCTACAGATCAGGCGAGGTGATTCGGCTGCCCAAAGGTGTTTCGATTCCCGTGACACTAAAGGTTCTGGAGTTTGAACTTTTCCATTTCTGTCCAATTCAAGAAATTGCGTCCAGTATATCTTTTGCAGCAATAGGTCTAATGGATATGTTCAACACTGGAGGAGCTGTGGAAGAAGTCGAAATTCATAGAGAGACTGACAACAAACAAGAACTATTTGACGGTGAGGCTGTATCCGAACTGATAACTTCTCTAGGTCCTAACCGAACAATGACTGCAACTATTACTTTGAAAGTTAGAGGAAGTGGAAAGTTTGGAGTTTACTCCTCGCAGCATCCACTGAAGTGTGCGGTGGATGGAACTGAAACTGACTTCAACTATGACTCAGAGACTGGATTGTCAACCTTCTTCATCCCAGTTCCTCAAGAGGAGTTGTATAAATGGTTAATTGAGATTCAAGTTTAA 2385 0.4503 MTVTPKISVNDGNLVVHGKTILKGVPENVVLTPGSGNGLVTGGAFIGATASDSKSLHVFPIGILEGLRFVCCFRFKLWWMTQRMGNCGRDIPLETQFMLIESKDSEGEAEEAEKSPVIYTVLLPLLEGPFRSVLQGNEKSEIEICFESVPSSLPKMRGGAVIIRDHAVETNQGLHMVYMHAGTNPFEVINQAVKAVEKHMQTFHHREKKRLPSFLDMFGWCTWDAFYTDVTAEGVEQGLKSLSDGGTPPRFLIIDDGWQQIESKAKDPGCVVQEGAQFATMLTGIKENAKFHKNKNGEHSEPASGLKHLVDGVKKHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFSDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLSDGSVLRAQLPGRPTRDSLFVDPARDRTSLLKIWNMNKCTGVVGVFNCQGAGWCKVEKKTRIHDISPGTLTSSVCASDVDLINHVAGAEWHGETIVYAYRSGEVIRLPKGVSIPVTLKVLEFELFHFCPIQEIASSISFAAIGLMDMFNTGGAVEEVEIHRETDNKQELFDGEAVSELITSLGPNRTMTATITLKVRGSGKFGVYSSQHPLKCAVDGTETDFNYDSETGLSTFFIPVPQEELYKWLIEIQV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02357 794 Pfam Raffinose synthase or seed imbibition protein Sip1 7 777 IPR008811 -
Vifa5g02357 794 PANTHER - 1 791 IPR008811 -
Vifa5g02357 794 SUPERFAMILY (Trans)glycosidases 214 541 IPR017853 -
Vifa5g02357 794 Gene3D Aldolase class I 215 542 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02357 Vifa-Chr5 772793796 772798155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02357 1 569 Glycoside Hydrolase AT3G57520 79.298 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02357 K06617 - gmx:100807861 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02357 5 772793796 772798155 Vifa5g02357 5 772793796 772798155 ECH
Vifa5g02357 5 772793796 772798155 Vifa3g00494 3 83746196 83750397 PCT