Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00494 ATGCTAAGGACAACAACGTCAGTAGCTTCACAACAATACTCCAACAGGTGGATAAGGATTCCTCCTTCATGTCTGCCGCCACCAAGTCGGAAAATCTCTAATTCACGCTTAACCTTTAGTACATATCATCATAATAACTCCCTAGTGTTCAAGTGTTCCAACATGACAGTGACACCTAAGATATCGGTTAACGACGGGAATTTAGTGGTTCACGGGAAGACCATATTGAGTGCAGTTCCAGACAATATTGTTTTAACACCAGGAACTGGAAAAGGCATTGAGACCGGTGCTTATATTGGTGCTACTGTTTCCAATACCAAAAGCATCCATGTCTTTCCCGTAGGTGTCTTACAGGATCTCCGATTCTTGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACACATAGAGTAGGAACTTGTGGAAGAGATATCCCTCTAGAAACCCAATTCATACTTATAGAGATCAAAGACAGTAAAAATCAGCACGAAAATTCTCCGGTCATTTACACTGTCTTGCTTCCTTTATTGGAAGGCCAGTTCCGTGCTGTCCTACAAGGAAATGACAAAAATGAGATAGAGATTTGCCTTGAAAGTGGAGATCCTGCTGTTGAGACCAATCAAGGCCTTCACCTGGTGTACATGCATGCAGGAACCAACCCTTTTGAAGTCATCAGTCAAGCTGTCAAGGCTGTAGAAAAACACATGCAAACTTTTCTGCATCGAGAGAAGAAAAGATTACCGTCTTTCATTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTATTGAAGAAGGATTGAAAAGCTTATCAGAGGGAGGCGCATCTCCTCGGTTCCTCATCATCGATGATGGTTGGCAACAGATTGAGAGTAAACCAAAAGATGCCGATTCTCTTGTACAAGAAGGAGCACAGTTTGCGACAAGGTTGACAGGTATTAAAGAAAACACTAAGTTTCAAAAGAATGGTGGGGGAAAAGGCCTGGAGCATGTTGTAGATCAAACAAAGGAACTTCACAATATGAAGTATGTATATGTTTGGCATGCTCTAGCTGGTTATTGGGGTGGAGTGAAGCCAACAGCAATTGGAATGGAGCACTTCAACACTTGTGTGGCATACCCTGTACACTCTCCGGGCGTTCTAGGAAATCAACCAGACGCCGTAATGGACAGCTTGACTGTCCATGGCTTAGGTCTAGTTCATCCGAAGAAGGTCTTTGATTTCTACAATGAGCTCCATGCTTACTTAGCTTCGTGCGGAGTAGATGGAGTGAAAGTTGATGTGCAAAACATTATCGAGACCCTTGGTACAGGACATGGCGGAAGAGTCTCAATCACACGTAGCTATCATCAAGCGCTTGAGGCCTCTATAGCTCGAAATTTTTGTGACAACGGATGCATTGCTTGCATGTGTCACAATACTGATGGCCTCTATAGTGGCAAGCAGACTGCTGTAGTGAGAGCCTCTGATGACTTTTACCCACATGACCCTGCTTCTCATACCATTCATGTTTCATCGGTTACGTATAACTCAATTTTCCTTGGAGAGTTCATGCAACCTGACTGGGACATGTTTCATAGTTTACATCCGGCAGCCGAGTATCATGCTGCAGCTCGTGCGATAAGTGGAGGTCCAATTTATGTCAGTGATAAACCAGGAAGGCACAATTTTGATCTTCTAAAGAAACTGGTTCTTCATGATGGCTCGGTTCTCCGTGCTCAGCTACCTGCCCGACCCACTGTTGACTCTCTCTTTGTTGATCCAGCAAGAGATGGGAAAAGCTTGCTCAAGATATGGAACTTGAACAAATATTGTGGAGTTGTTGGTGTATTTAACTGTCAAGGTGCTGGGTGGTGCAAGATAGAAAAGAAAAACCGTATTCATTGCGAAACCCCTGAGACACTTACTGGCTCTGTCTGTACCTCCGATGTTGACCTCATTGCTCAAGTAGCTGGTGCAGATTGGAATGGGGACGCTGTTGTCTATTCTTACAGATCAGGCAACATAATTCGGTTACCGAAGGGTGCTTCAGTGCCAGTGACATTAAAAGTTCTAGAATATGAGCTTTTCCATTTCTATCCAATTAAGGAAATCGCGCAAGGTATTTGGTTTGCGCCGATAGGGCTGTTGGATATGTTCAACACAGGAGGAGCTGTGGAACAGTTGGAAATCTATAAAAAAGAATGTGGAATGGCTGGTGAAGAAGAAGTAGCTGCATCAGTTAGCCTAAAAGTAAGGGGAAGTGGAAGATTCGGGGTTTACTCTTCCCAGAAGCCAGTGAAGTGTGTGGTGGGTGATAATGAAAATGAGTTCAACTATGAGTCAGAGACTGGGTTGACAACTTTCTACATCCCAGTTTCAGTTGAAGACATGTATAAATGGTCAATAGAGATACAGTTTTGA 2424 0.4377 MLRTTTSVASQQYSNRWIRIPPSCLPPPSRKISNSRLTFSTYHHNNSLVFKCSNMTVTPKISVNDGNLVVHGKTILSAVPDNIVLTPGTGKGIETGAYIGATVSNTKSIHVFPVGVLQDLRFLCCFRFKLWWMTHRVGTCGRDIPLETQFILIEIKDSKNQHENSPVIYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDPAVETNQGLHLVYMHAGTNPFEVISQAVKAVEKHMQTFLHREKKRLPSFIDWFGWCTWDAFYTDVTAEGIEEGLKSLSEGGASPRFLIIDDGWQQIESKPKDADSLVQEGAQFATRLTGIKENTKFQKNGGGKGLEHVVDQTKELHNMKYVYVWHALAGYWGGVKPTAIGMEHFNTCVAYPVHSPGVLGNQPDAVMDSLTVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGTGHGGRVSITRSYHQALEASIARNFCDNGCIACMCHNTDGLYSGKQTAVVRASDDFYPHDPASHTIHVSSVTYNSIFLGEFMQPDWDMFHSLHPAAEYHAAARAISGGPIYVSDKPGRHNFDLLKKLVLHDGSVLRAQLPARPTVDSLFVDPARDGKSLLKIWNLNKYCGVVGVFNCQGAGWCKIEKKNRIHCETPETLTGSVCTSDVDLIAQVAGADWNGDAVVYSYRSGNIIRLPKGASVPVTLKVLEYELFHFYPIKEIAQGIWFAPIGLLDMFNTGGAVEQLEIYKKECGMAGEEEVAASVSLKVRGSGRFGVYSSQKPVKCVVGDNENEFNYESETGLTTFYIPVSVEDMYKWSIEIQF 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00494 807 Gene3D Aldolase class I 252 570 IPR013785 -
Vifa3g00494 807 Pfam Raffinose synthase or seed imbibition protein Sip1 61 790 IPR008811 -
Vifa3g00494 807 SUPERFAMILY (Trans)glycosidases 249 570 IPR017853 -
Vifa3g00494 807 PANTHER - 55 804 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00494 Vifa-Chr3 83746196 83750397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00494 55 599 Glycoside Hydrolase AT3G57520 76.545 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00494 K06617 - gmx:100807861 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00494 3 83746196 83750397 Vifa3g00494 3 83746196 83750397 ECH
Vifa5g02357 5 772793796 772798155 Vifa3g00494 3 83746196 83750397 PCT