Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02355 ATGCCCCTCCTAAGACACAATCTCTTCTTCTCATTCACTATCATCATCATCATCATTTCATTTGTTGCTTGTAATAGCAACTTGCAAAAGGACCCACTTATTGCTATATACGTTGATAATTCACCCTCCAATGATGATGATGGCGGTGATACATTATTATTCAAAAACATGATCAAGAAAAATACAAATAGTTTTTTGAGCTTAAACAAGTTTGATGGAACTTCATCACATAAGTTAGAAATTATTAATGTCAATGATTATGGTGCTAAAGGTGATGGTTATTCAGATGACACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTTCTTCAAGAGAATCAGTTTTTGTGGCACCTGAAGATAATAATTATTTACTCAAACCAATTAGATTCTCTGGTCCTTGCAAATCTAACATAACAGTTCAGATATTTGGAAATCTTGAAGCATCAGATAAACTATCAGATTACAAGGATGATAAAAGACATTGGCTTATATTTGATAGTGTTCAAAAACTATTAGTTAATGGTGGTGGAACCATTAATGGAAAAGGAAACATATGGTGGAAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTTATAATTGCAAGGACTTGGTAGTTCAAAATTTGAAGATAAAAAATGCACAACAAATTCATGTTTCATTCCAAGATTCGAATAATATTACCGTTTTTAGCCTCAACGTGTCATCACCAGAAGATAGTCCTAATACCGATGGGATTCATGTCACCAACACACAAAATATCAAAATATCTAGCTGTGTCATAGGAACAGGTGATGATTGTATATCAATTGTACATGGATCTAGGAACGTAGAAGCCACAAATATAAGTTGTGGACCTGGCCATGGCATCAGTATTGGAAGTTTGGGTGCTGGAAAATCCAAAGAATTTGTTACTGGAGTAATAGTAAATGGATCTAAGATTTCTGGAACTAAAAATGGAGTTAGAATTAAGACATGGCCGGGAGGTTCAGGAAAAGCTAGCAATATAAAATTTCAGAACATTGAAATGGACAATGTGACCAACCCTATAATAATAGACCAAAATTACTGTGACAAGAAAAAAAAACCATGCAAAAAATCGAACTCCGCGGTCCAAATTAGCGATGTGTTGTACGAGAATATAATAGGTACAAGTGCTTCTGATGTAGCGGTGAAGTTTGATTGCAGCAAGAAATTTCCATGCAAGGATATAGTAATGCAGAACATAGATTTGCAGTATGAAGAAGAAGGAGGAGAAGAAGGAGAAGGTGCTAAGGCTTTATGCGACAATGTTGATTTGAGCTACATAGGGCATGTTATGCCTCGTTGCTACTCATAA 1371 0.3552 MPLLRHNLFFSFTIIIIIISFVACNSNLQKDPLIAIYVDNSPSNDDDGGDTLLFKNMIKKNTNSFLSLNKFDGTSSHKLEIINVNDYGAKGDGYSDDTQAFKKAWEVVCSSRESVFVAPEDNNYLLKPIRFSGPCKSNITVQIFGNLEASDKLSDYKDDKRHWLIFDSVQKLLVNGGGTINGKGNIWWKNSCKRNKKKPCKDAPTALTFYNCKDLVVQNLKIKNAQQIHVSFQDSNNITVFSLNVSSPEDSPNTDGIHVTNTQNIKISSCVIGTGDDCISIVHGSRNVEATNISCGPGHGISIGSLGAGKSKEFVTGVIVNGSKISGTKNGVRIKTWPGGSGKASNIKFQNIEMDNVTNPIIIDQNYCDKKKKPCKKSNSAVQISDVLYENIIGTSASDVAVKFDCSKKFPCKDIVMQNIDLQYEEEGGEEGEGAKALCDNVDLSYIGHVMPRCYS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02355 456 FunFam Polygalacturonase QRT2 68 455 - -
Vifa5g02355 456 Gene3D - 70 451 IPR012334 -
Vifa5g02355 456 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vifa5g02355 456 SMART pbh1 344 365 IPR006626 -
Vifa5g02355 456 SMART pbh1 315 336 IPR006626 -
Vifa5g02355 456 SMART pbh1 262 283 IPR006626 -
Vifa5g02355 456 SMART pbh1 235 261 IPR006626 -
Vifa5g02355 456 SUPERFAMILY Pectin lyase-like 78 455 IPR011050 -
Vifa5g02355 456 ProSitePatterns Polygalacturonase active site. 292 305 IPR000743 GO:0004650|GO:0005975
Vifa5g02355 456 Pfam Glycosyl hydrolases family 28 114 425 IPR000743 GO:0004650|GO:0005975
Vifa5g02355 456 PANTHER - 80 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02355 Vifa-Chr5 771915413 771917662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02355 60 456 Glycoside Hydrolase AT2G41850 55.250 6.27e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02355 K01184 - gmx:100797601 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02355 5 771915413 771917662 Vifa5g02355 5 771915413 771917662 ECH
Vifa3g00492 3 82619044 82622040 Vifa5g02355 5 771915413 771917662 PCT