Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00492 ATGGCCCTCCAAAGAAATCTCTCACTCATTATGATAATGATTTGTGTTGTGGCTTGTTATAGTGAGGACCCACTTAGTTCAATTGTTGAGGATTCTCCATATGTATATGATGGTGTAATATTCAAGGACTTTATTAAGCAAATAGTAGATCCTGTTTTGAGCTTAGAGAGCAAGTTGGGAAGCCTTTCTCCTTCCTCAGTTAAAACCTTTAATGTTGATGAATATGGAGCTCAAGGAGATGGTAAAAATGATGACACACAGGCATTCAAGAAAGTTTGGGAAGCAGCATGTTCTTCTAAGGGATCAGTTCTTGTGGTGGCTCAAAAGAATTATCTTCTAAAGCCATTCACATTCTCTGGTCCTTGCAAATCCAACAACATAGCTGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAATCCATCTGATTACAACCAAGATCCCTCACACTGGCTTATGTTTGATAGTGTTCACAAATTAACTGTTAAGGGTGGTGGAACCATTGATGGAAATGGAAATATTTGGTGGCAAAACTCATGCAAAAAGAACAAAAAGCTGCCTTGCAAAAATGCCCCTACGGCACTGACTTTGTACAAGTGCAACAACTTGGTAGTTGATGATTTGACTATAAAAAATGGGCAGCAAATTCATCTTCAGTTCCAAGATTCTTCCAATGTTAGAGCTTCTGGTCTCAATGTGAGGTCGCCTGAGGATAGTCCAAACACCGATGGAATTCATGTCACCAATACTGAAAACATCCAAATCTCAAGCTCCTTTATAGGAACCGGTGATGATTGTATATCAATTGTAGATGGAACCAAGAATCTACATGCTACAGATATAACCTGTGGGCCAGGCCATGGTATCAGCATTGGAAGTTTAGGGGAAGATGGTTCGAAGCAATTTGTTTCAGGAATAACAGTAAAAGGAGTTAATATTTCGGGTACTAGTAATGGAGTGAGAATCAAGACATGGCAAGGAGGATCAGGAAGTGCAAGCAACATCAAATTTCAGAATATTCAAATGAAAAATGTGACGAATCCTATAATAATAGATCAGAACTACTGTGATCAAGATAATCCATGCCAAGAACAGAAATCTGCAGTTCAGATAAGGAATGTGTTGTACCAGAACATAAAAGGAACAAGTGCCTCTGATGTGGCTATGGAATTCAATTGCAGCAAGAACTTTCCATGTCAGGGGATAGTATTGCAAAACATAGACCTGCAACTTGAAGGCGGAGGAGAGCCTAAGGCTTCATGCAGCAATGTTATATTGTCATACAAAGGAAATGTTAAACCTCGTTGCGATTACATTGAACAAGTGAATCAAGATGGTGGATTTGGAAGCACTTATATATAA 1362 0.3906 MALQRNLSLIMIMICVVACYSEDPLSSIVEDSPYVYDGVIFKDFIKQIVDPVLSLESKLGSLSPSSVKTFNVDEYGAQGDGKNDDTQAFKKVWEAACSSKGSVLVVAQKNYLLKPFTFSGPCKSNNIAVQISGSLVASDNPSDYNQDPSHWLMFDSVHKLTVKGGGTIDGNGNIWWQNSCKKNKKLPCKNAPTALTLYKCNNLVVDDLTIKNGQQIHLQFQDSSNVRASGLNVRSPEDSPNTDGIHVTNTENIQISSSFIGTGDDCISIVDGTKNLHATDITCGPGHGISIGSLGEDGSKQFVSGITVKGVNISGTSNGVRIKTWQGGSGSASNIKFQNIQMKNVTNPIIIDQNYCDQDNPCQEQKSAVQIRNVLYQNIKGTSASDVAMEFNCSKNFPCQGIVLQNIDLQLEGGGEPKASCSNVILSYKGNVKPRCDYIEQVNQDGGFGSTYI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00492 453 SUPERFAMILY Pectin lyase-like 66 438 IPR011050 -
Vifa3g00492 453 PANTHER - 68 424 - -
Vifa3g00492 453 SMART pbh1 250 271 IPR006626 -
Vifa3g00492 453 SMART pbh1 303 324 IPR006626 -
Vifa3g00492 453 SMART pbh1 332 353 IPR006626 -
Vifa3g00492 453 SMART pbh1 200 249 IPR006626 -
Vifa3g00492 453 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Vifa3g00492 453 FunFam Polygalacturonase QRT2 56 437 - -
Vifa3g00492 453 Gene3D - 57 444 IPR012334 -
Vifa3g00492 453 Pfam Glycosyl hydrolases family 28 101 424 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00492 Vifa-Chr3 82619044 82622040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00492 55 436 Glycoside Hydrolase AT3G07970 58.182 1.84e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00492 K01184 - gmx:100816917 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00492 3 82619044 82622040 Vifa3g00492 3 82619044 82622040 ECH
Vifa3g00492 3 82619044 82622040 Vifa5g02355 5 771915413 771917662 PCT