Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02330 ATGTCTAGCGCTACAAAAGGGTTGGAACCAGCATTCCAAGGAGTAGGCCAAAAGTTTCCATTGCCAAAATCTGATTATGGGAAATTCTACATGGGAGATTCTTACATTATCTTGCAGACAATACAAGGCAAAGGAGGCAATTATTTGTTTGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAAGCTGGAACTGCAGCCATTAAAACTGTTGAACTTGATTCATCCCTTGGAGGACGTGCAGTGCAGCACAGGGAACTCCAAGGGCACGAGTCTGACAAGTTTTTGTCATACTTTAAGCCATGTATTATACCATTAGAAGGAGGTGTTGCATCTGGCTTCAAAACACCAGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAAAGGAAAAAGAGTTGTCAGAATAAAACAGATTCCTTTTGCGCGGTCTTCGCTGAATCATGATGATGTATTCATCTTAGACACTAAGGAAAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGGAAAGAGCAAAGGCTTTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAAGGGACAAGCAATGTTGCAATTGTCGATGATGGAAAGTTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTCCTGTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTCATCAGCGAAGATGATATTGTTCCAGAGACCATTCCTGCTCAACTTTACAGTATTGCTGATGGTGAGGCCAAGTCTGTGGAAGGTGAACTCTCTAAGTCACTGTTGGAGAACAACAAATGCTATTTATTGGACTGTGGTGCTGAGGTGTTTGTCTGGGTTGGCCGAGTAACACAAGTTGATGAAAGAAAAGCTGCTTGTCAAGCTGCTGAGGACTTTGTTACGAGTCAAAAAAGGCCAAAAGCTACAAGGATAACAAGGGTTATTCAAGGTTATGAGACACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTTCTACTGCTGGTGCTGAGGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAGCAACAAGGTATGGGTGTCAAGGGAGCTGCAAAAAGTACTCCAGTTAACGAGGAAATTCCACCTCTGCTTGAAGCAGGTGGAAAATTGGAGGTATGGATAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAAGATAATGGTAAATTTTATAGTGGAGATTGTTACATAGTGCTTTACACTTATCACTCTGGTGAGAGGAAGGAAGACTACTTCTTGTGCTGTTGGTTTGGAAAACACAGCATTGAGGAGGACCAAAAGATGGCTACTCGGTTAGCTACTACAATGTCCAACTCACTAAAGGGTAGACCTGTTCAGGGTCGCTTGTTTGATGGTAAAGAATCACCACAGTTTGTCGCACTTTTCCAACCTATGGTGGTCCTCAAGGGAGGTTTGAGCTCGGGTTACAAAAAGTTAATTGCAGAGAAAGGTTTGCCAGATGAGACATACACAGCAGAGAATATTGCTCTTATTCGGATTTCGGGAACATCCACTCATAATAATAAAACAATGCAAGTTGATGCAGTGGCAACATCGTTGAATTCTACCGAGTGTTTTCTTCTGCAATCTGGCTCTACAGTTTTTACTTGGCATGGCAACCAATCTTCCATTGAACAGCAGCAGCTTGCAGCAAAAGTTGCTGAGTTTTTAAGGCCAGGAATTGCTTTAAAGCATGCTAAAGAAGGAACAGAAACCTCAGCTTTCTGGTCTGCTGTAGGAGGAAAACAAAGTGTCACTAGCAAAAAAGTCACTAATGACATTGTTAGAGACCCGCATTTGTTCACTTTGTCATTTAATAAAGGAAAATTACAGGTAGAAGAGCTCTACAACTTTTGCCAGGATGATCTGTTAACAGAAGATATCCTCGTACTTGACACCCATGCAGAAGTGTTTGTTTGGATTGGCCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTCTTGAAGTTGCCCAGAAATACATAGAAAAGGCTGCATCTCTGGAGGGACTATCTCCTCAAGTACCACTATATAAAGTAACCGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAATCTACGGTTCAAGGAAACTCTTTCCAGAAAAAGTTGGCACTGCTATTTGGGATTGGTCATTCTGTAGAGGAAAAATCTAATGGATCAAGTCAAGGCGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAATAATGCATTCAATTCATCTCCGGAGACAGCACCCAGTACTGATAGATTGAATAGCTTAAATCAAGGAGGACCGAGGCAAAGGGCAGAAGCTTTAGCTGCCTTAAACTCTGCCTTCAGTTCATCAACCGGAACTAAAGTTGTTACACCTAGGAAATCTCCAAGAGGTCAAGGATCACAAAGAGCAGCTGCAGTAGCTGCTCTTTCTAACGTTCTCACTGCTGAAAAGAAGAAACAATCACCTGACGGTTCTCCTGTGGCAAGCGGTAGTCCTGTTGTTGAAAGTAACACTCCCGATGCTAAAAGTGAAACTGCCCCTTCTGAATCGGAAGGTCCTGAAGAAGTTACAGAAACCAAGGAGGCAGAGGAACTTGCTCCTGAGACTGGTAGCAATGGAAATTCAGAAACAAAACAAGAAGACGTAGAGGATGGGCTTGATAACCAAAATAGTCAGAGTGTCTTCACTTATGAGCAATTGAAGGCTAAATCTGGGAGTCATCTGTCTGGAATTGATCTTAAACGCAGGGAGGCTTATCTGTCAGAAGAAGAGTTTCTCACAGTGTTTGCGATATCAAAAGAAGCATTCTCTAAGTTACCAAGATGGAAGCAAGACATGCTGAAAAGAAAAGTTGATTTGTTCTAG 2907 0.419 MSSATKGLEPAFQGVGQKFPLPKSDYGKFYMGDSYIILQTIQGKGGNYLFDIHFWIGKDTSQDEAGTAAIKTVELDSSLGGRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEEFETRLYVCKGKRVVRIKQIPFARSSLNHDDVFILDTKEKIYQFNGANSNIQERAKALEVIQLLKEKYHEGTSNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDIVPETIPAQLYSIADGEAKSVEGELSKSLLENNKCYLLDCGAEVFVWVGRVTQVDERKAACQAAEDFVTSQKRPKATRITRVIQGYETHSFKSNFDSWPSGSASTAGAEEGRGKVAALLKQQGMGVKGAAKSTPVNEEIPPLLEAGGKLEVWIINGSAKTPLPKEDNGKFYSGDCYIVLYTYHSGERKEDYFLCCWFGKHSIEEDQKMATRLATTMSNSLKGRPVQGRLFDGKESPQFVALFQPMVVLKGGLSSGYKKLIAEKGLPDETYTAENIALIRISGTSTHNNKTMQVDAVATSLNSTECFLLQSGSTVFTWHGNQSSIEQQQLAAKVAEFLRPGIALKHAKEGTETSAFWSAVGGKQSVTSKKVTNDIVRDPHLFTLSFNKGKLQVEELYNFCQDDLLTEDILVLDTHAEVFVWIGQCVDPKEKQNALEVAQKYIEKAASLEGLSPQVPLYKVTEGNEPCFFTTYFSWDHAKSTVQGNSFQKKLALLFGIGHSVEEKSNGSSQGGPRQRAEALAALNNAFNSSPETAPSTDRLNSLNQGGPRQRAEALAALNSAFSSSTGTKVVTPRKSPRGQGSQRAAAVAALSNVLTAEKKKQSPDGSPVASGSPVVESNTPDAKSETAPSESEGPEEVTETKEAEELAPETGSNGNSETKQEDVEDGLDNQNSQSVFTYEQLKAKSGSHLSGIDLKRREAYLSEEEFLTVFAISKEAFSKLPRWKQDMLKRKVDLF 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02330 968 PANTHER VILLIN 15 958 IPR007122 GO:0051015
Vifa5g02330 968 MobiDBLite consensus disorder prediction 861 879 - -
Vifa5g02330 968 MobiDBLite consensus disorder prediction 796 811 - -
Vifa5g02330 968 MobiDBLite consensus disorder prediction 759 783 - -
Vifa5g02330 968 Pfam Villin headpiece domain 933 968 IPR003128 GO:0003779|GO:0007010
Vifa5g02330 968 CDD gelsolin_S2_like 125 219 - -
Vifa5g02330 968 FunFam Gelsolin 507 601 - -
Vifa5g02330 968 CDD gelsolin_S1_like 12 111 - -
Vifa5g02330 968 CDD gelsolin_S4_like 374 475 - -
Vifa5g02330 968 ProSiteProfiles Headpiece (HP) domain profile. 903 968 IPR003128 GO:0003779|GO:0007010
Vifa5g02330 968 Pfam Gelsolin repeat 255 324 IPR007123 -
Vifa5g02330 968 Pfam Gelsolin repeat 630 701 IPR007123 -
Vifa5g02330 968 Pfam Gelsolin repeat 138 192 IPR007123 -
Vifa5g02330 968 Pfam Gelsolin repeat 394 471 IPR007123 -
Vifa5g02330 968 Pfam Gelsolin repeat 19 98 IPR007123 -
Vifa5g02330 968 Pfam Gelsolin repeat 524 571 IPR007123 -
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 371 517 - -
Vifa5g02330 968 CDD gelsolin_S3_like 241 330 - -
Vifa5g02330 968 Gene3D Severin 15 118 IPR029006 -
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 584 706 - -
Vifa5g02330 968 MobiDBLite consensus disorder prediction 796 908 - -
Vifa5g02330 968 PRINTS Gelsolin family signature 425 443 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 633 655 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 399 415 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 662 681 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 458 478 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 521 541 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 581 600 IPR007122 GO:0051015
Vifa5g02330 968 PRINTS Gelsolin family signature 310 331 IPR007122 GO:0051015
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 17 134 - -
Vifa5g02330 968 Gene3D Severin 376 506 IPR029006 -
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 498 600 - -
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 210 332 - -
Vifa5g02330 968 SMART VILL_6 380 478 IPR007122 GO:0051015
Vifa5g02330 968 SMART VILL_6 506 595 IPR007122 GO:0051015
Vifa5g02330 968 SMART VILL_6 238 331 IPR007122 GO:0051015
Vifa5g02330 968 SMART VILL_6 124 221 IPR007122 GO:0051015
Vifa5g02330 968 SMART VILL_6 6 104 IPR007122 GO:0051015
Vifa5g02330 968 SMART VILL_6 612 707 IPR007122 GO:0051015
Vifa5g02330 968 FunFam Villin-like 1 602 723 - -
Vifa5g02330 968 Gene3D Severin 233 345 IPR029006 -
Vifa5g02330 968 Gene3D Severin 507 599 IPR029006 -
Vifa5g02330 968 Gene3D Severin 605 724 IPR029006 -
Vifa5g02330 968 Gene3D Villin headpiece domain 888 968 IPR036886 GO:0003779|GO:0007010
Vifa5g02330 968 SUPERFAMILY Actin depolymerizing proteins 116 224 - -
Vifa5g02330 968 MobiDBLite consensus disorder prediction 759 780 - -
Vifa5g02330 968 CDD gelsolin_S6_like 610 708 - -
Vifa5g02330 968 SUPERFAMILY VHP, Villin headpiece domain 903 968 IPR036886 GO:0003779|GO:0007010
Vifa5g02330 968 FunFam Villin-like 1 118 234 - -
Vifa5g02330 968 CDD gelsolin_S5_like 508 597 - -
Vifa5g02330 968 SMART VHP_1 933 968 IPR003128 GO:0003779|GO:0007010
Vifa5g02330 968 MobiDBLite consensus disorder prediction 828 859 - -
Vifa5g02330 968 FunFam Villin-4 235 341 - -
Vifa5g02330 968 Gene3D Severin 119 229 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02330 Vifa-Chr5 765821423 765832941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02330 - - gmx:100803795 1605.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02330 5 765821423 765832941 Vifa3g00479 3 76668274 76686835 PCT