Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00479 ATGTCTAACACTATAAAGGTTTTGGATCCTGCATTCCATGGAGTGGGTCAAAGATTAGGAACTGAAATATGGAGGATTGAGAATTTTCAACCGGTTCCATTGCCCAAATCTGAATATGGGAAATTTTACATGGGAGATTCATACATCGTCTTGCAGACCACACAAGGCAAAGGAGGTGCTTATTTTTATGATTTACACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCCGCCATTAAAGCTGTTGAACTTGACACAGCTCTTGGAGGACGAGCTGTGCAACACAGAGAGATTCAAGGACATGAATCTGACATTTTTTTGTCATATTTTAGGCCATGTATTATACCATTAGAGGGGGGTGTTGCATCTGGATTTAGAAAACCTGAAGAGGAGGAGTTTGAAACACATTTGTATGTATGCAGAGGGAAAAGAGTTGTCAGATTGAAACAGGTCCCGTTTGCAAGGTCTTCATTGAACCATGATGATGTGTTCATTCTTGACACCGAGAATAAGATTTATCAATTCAATGGTGCAAATTCCAATATTCAGGAAAGAGCCAAGGCTTTGGAAATTATACAGTTTCTGAAAGAAAAATATCATGAAGGGAAATGTGATGTTGCAATTGTTGATGATGGAAAGTTAGACACAGAGTCAGATTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGCAAAAAAGGTAATCAGTGAGGATGATATTATTCCAGAGGCAATTCCTGCTGAACTGTATAGTATCGTTAATGGTGAAGTCAAGTCAGAGGAAGCTGAACTTTCTAAATCACTGTTGGAGAACAACAGATGCTATTTACTGGACTGTGGTGCTGAGATTTTTATTTGGTTTGGCCGGGTAACACAAGTGGAAGAACGAAAAGCAGTTTGCCAGGCAGCTGAGGAGTTTGTTTTAAGCCAAAATAGGCCAAAATCTACAAGGATAACAAGGATTACTCAAGGTTACGAGACACGTTCATTTAAGTCTAACTTTGATTCTTGGCCATCAGGATCTGCTGGTCCTGTCGTCGATGAGGGAAAGGGAAAAGTTACAGCATTGCTAAAGCAACAAGGGATGGGTGTCAAAGGAATGACAAAAAGTACCCCAGTAAATGAGGAAATTCCACATTTGCTTGAAGAAGGTGGAAAGATGGAGGTATGGAGAATCAATGAAAGTGCTAAGACCTCATTGCCGAAGGAGGATATTGGCAAATTTCATAGTGGAGATTGTTACATTGTACTGTACACATACCATTCTGGTGAGAGGAAAGAAGATTACTTCTTGTGCTGCTGGTTTGGCAAAGACAGCATTGAGGAGGACCAAACACTAGCTTTGAAATTGGCTAATACAGTGTCCAACTCTATGAAGGGTAGACCTGTTCAGGGTCGCATATTCGAAGGTAAAGAGTCACCACAATTTGTTGCTCTTTTCCAACCCATGGTAGTCCTTAAGGGAGGTTTGAGCACTGGATATAAACAATTTGTAGCAGACAAAGGTTTATCAGATGAAACGTACACGGAAGAATCTACTGCGCTTATCCGAATTTCTGGAACCTCCATCCATAACAATAAAGCCGTGCAAGTTGATGCAGTGCCATCGTCATTGAATTCTACCGAGTGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGGAATCAGTGTTCTATTGAACAGCAGCAGCTAGCAGCAAAGGTCGCAGAATTTCTAAGACCAGGAGTTGCTTTAAAGCATGCTAAAGAAGGTACAGAAAACTCAGCTTTCTGGCTTCCACTAGGAGGAAAACAAAGTTACACTAGCAAAAAAGTTGCTAATGAGGTTAACAGAGATCCACATCTATTCACCTACTCATTATATAAAGGAAAGTTACATGTAGAGGAGGTTTACAACTTCTCCCAAGATGATTTGTTAACAGAGGATATCCACATACTGGACACACATGCAGAAGTGTTTGTTTGGATTGGTCAGTGTGTTGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGGCCAGAATTACATAGATGTGGCTGCATCTCTGGAGGGACTATCTCCACGTGTACCCTTATATAAAGTAACAGAAGGGAACGAACCTTTCTTTTTCACGTCATACTTTTCATGGGATTGGGATCATTCAAAAGCTAAGGTTCACGGGAACTCGTTCCAGAAAAACTTGACGTTACTTTTTGGGAATGGCCATGCTGTGGAGGAAAAATCAAATGGGACAAGTGGACCAAGACAAAGGGCAGAAGCTTTGGCTGCTTTAAATTCTGCTTTTAGCTCGTCGTCTATGAAAATGAGTAAGTCAGAGGAGAGATTGAATGGGTTAAACCATGGAGGACCGAGACAAAGAGCGGAAGCTTTAGCTGCTTTAAACTCTGCATTTAATTCTTCATCAACGACGAAGAGAGTTGCTCCTAGGCCACCTGGAAAAGGTCAAGGATCGCAAAGAGCAGCCGCCTTGGCTGCTCTTTCATCAGTTCTTACTGCTGAAAAGAACAAACAATCACCTGATTCATCTCCTGATGCCAGCCATGTCCCAGAGAGTGGCACTTTTGAAGTTAAAAGTGAAAGTGAATATTCTGAAGTTGATGAAACTACTGAAGCCAAGGAAATGGAAGAAGTTGCCGCGGAATCTGGTAGCAATGAGGGTCTTGAATCTAGTCAAGAAAATGTGGAAGATGGAAATAATGACCAGAGTAGTCAAAGGACATTCAGTTATGATCAGTTAAAGACTACGTCTGGCAAAATTGTGTCTGGAATTGACCTTGAACGGCGAGAGGCTTATCTGTCAGACGAAGACTTCCAGACTGTATTTGGAATGGTAAAAGAAGCATTTTATAAATTGCCGAAATGGAAGAAAGACATGCTGAAAAAGAAATTTGAATTGTTCTAG 2931 0.4104 MSNTIKVLDPAFHGVGQRLGTEIWRIENFQPVPLPKSEYGKFYMGDSYIVLQTTQGKGGAYFYDLHFWIGKDTSQDEAGTAAIKAVELDTALGGRAVQHREIQGHESDIFLSYFRPCIIPLEGGVASGFRKPEEEEFETHLYVCRGKRVVRLKQVPFARSSLNHDDVFILDTENKIYQFNGANSNIQERAKALEIIQFLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIAKKVISEDDIIPEAIPAELYSIVNGEVKSEEAELSKSLLENNRCYLLDCGAEIFIWFGRVTQVEERKAVCQAAEEFVLSQNRPKSTRITRITQGYETRSFKSNFDSWPSGSAGPVVDEGKGKVTALLKQQGMGVKGMTKSTPVNEEIPHLLEEGGKMEVWRINESAKTSLPKEDIGKFHSGDCYIVLYTYHSGERKEDYFLCCWFGKDSIEEDQTLALKLANTVSNSMKGRPVQGRIFEGKESPQFVALFQPMVVLKGGLSTGYKQFVADKGLSDETYTEESTALIRISGTSIHNNKAVQVDAVPSSLNSTECFVLQSGSTIFTWHGNQCSIEQQQLAAKVAEFLRPGVALKHAKEGTENSAFWLPLGGKQSYTSKKVANEVNRDPHLFTYSLYKGKLHVEEVYNFSQDDLLTEDIHILDTHAEVFVWIGQCVDPKEKQNAFEIGQNYIDVAASLEGLSPRVPLYKVTEGNEPFFFTSYFSWDWDHSKAKVHGNSFQKNLTLLFGNGHAVEEKSNGTSGPRQRAEALAALNSAFSSSSMKMSKSEERLNGLNHGGPRQRAEALAALNSAFNSSSTTKRVAPRPPGKGQGSQRAAALAALSSVLTAEKNKQSPDSSPDASHVPESGTFEVKSESEYSEVDETTEAKEMEEVAAESGSNEGLESSQENVEDGNNDQSSQRTFSYDQLKTTSGKIVSGIDLERREAYLSDEDFQTVFGMVKEAFYKLPKWKKDMLKKKFELF 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00479 976 MobiDBLite consensus disorder prediction 867 889 - -
Vifa3g00479 976 MobiDBLite consensus disorder prediction 840 858 - -
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 134 241 - -
Vifa3g00479 976 CDD gelsolin_S2_like 138 232 - -
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 9 148 - -
Vifa3g00479 976 Gene3D Severin 133 246 IPR029006 -
Vifa3g00479 976 Pfam Villin headpiece domain 941 976 IPR003128 GO:0003779|GO:0007010
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 383 529 - -
Vifa3g00479 976 Gene3D Severin 6 132 IPR029006 -
Vifa3g00479 976 ProSiteProfiles Headpiece (HP) domain profile. 911 976 IPR003128 GO:0003779|GO:0007010
Vifa3g00479 976 FunFam Gelsolin 6 131 - -
Vifa3g00479 976 CDD gelsolin_S1_like 12 124 - -
Vifa3g00479 976 MobiDBLite consensus disorder prediction 893 920 - -
Vifa3g00479 976 PANTHER VILLIN 6 966 IPR007122 GO:0051015
Vifa3g00479 976 MobiDBLite consensus disorder prediction 806 920 - -
Vifa3g00479 976 Gene3D Villin headpiece domain 898 976 IPR036886 GO:0003779|GO:0007010
Vifa3g00479 976 SMART VHP_1 941 976 IPR003128 GO:0003779|GO:0007010
Vifa3g00479 976 MobiDBLite consensus disorder prediction 774 794 - -
Vifa3g00479 976 FunFam Villin-like 1 132 247 - -
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 223 348 - -
Vifa3g00479 976 Gene3D Severin 614 736 IPR029006 -
Vifa3g00479 976 Gene3D Severin 520 613 IPR029006 -
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 510 613 - -
Vifa3g00479 976 Gene3D Severin 386 519 IPR029006 -
Vifa3g00479 976 CDD gelsolin_S5_like 519 609 - -
Vifa3g00479 976 Gene3D Severin 252 350 IPR029006 -
Vifa3g00479 976 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Vifa3g00479 976 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Vifa3g00479 976 SUPERFAMILY VHP, Villin headpiece domain 909 976 IPR036886 GO:0003779|GO:0007010
Vifa3g00479 976 CDD gelsolin_S6_like 622 722 - -
Vifa3g00479 976 CDD gelsolin_S4_like 386 487 - -
Vifa3g00479 976 Pfam Gelsolin repeat 408 483 IPR007123 -
Vifa3g00479 976 Pfam Gelsolin repeat 639 710 IPR007123 -
Vifa3g00479 976 Pfam Gelsolin repeat 532 583 IPR007123 -
Vifa3g00479 976 Pfam Gelsolin repeat 150 217 IPR007123 -
Vifa3g00479 976 Pfam Gelsolin repeat 29 111 IPR007123 -
Vifa3g00479 976 Pfam Gelsolin repeat 266 337 IPR007123 -
Vifa3g00479 976 FunFam Gelsolin 518 613 - -
Vifa3g00479 976 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Vifa3g00479 976 SMART VILL_6 624 719 IPR007122 GO:0051015
Vifa3g00479 976 SMART VILL_6 139 234 IPR007122 GO:0051015
Vifa3g00479 976 SMART VILL_6 392 490 IPR007122 GO:0051015
Vifa3g00479 976 SMART VILL_6 19 117 IPR007122 GO:0051015
Vifa3g00479 976 SMART VILL_6 518 607 IPR007122 GO:0051015
Vifa3g00479 976 SMART VILL_6 255 344 IPR007122 GO:0051015
Vifa3g00479 976 FunFam Villin-4 248 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00479 Vifa-Chr3 76668274 76686835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00479 - - gmx:100788765 1518.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00479 3 76668274 76686835 Vifa3g00479 3 76668274 76686835 ECH
Vifa5g02330 5 765821423 765832941 Vifa3g00479 3 76668274 76686835 PCT