Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01539 ATGGCTATAAGTGGTTTAATTTCCAACACAAACTTCACTTCTTTCATTGCTTCAGGAAATTATCAATTGAGAAAGGATGTATCACTTCAAAGAGGAAGCATTTTTAGTGTTCATCATGGTGGCCAGATTGCAAAGAACCCCTTTGCAAGAACCAGAAGCCATATTGAACAAAGAGAAGTATATGGACTAGAAGTAAGAAAGCTTAGTAAGGTAAATAGAGCCTGTGTTCATTACAGGTCGGAGGAGTATGACATTGATGAAACAAAGGTGGATTCTGTGGTATCTGATGAAGGAACGGATGAAGCAATTCAATTGAAAGGAAATGGTGCACCAGTTTCTCCTTGGTGGCGGAAACTTCCTAAGCGCTGGCTTATCGTATTGCTGTGCTTTACTGCATTTCTTCTATGCAATATGGATCGCGTAAATATGAGCATAGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTACAACAGTTGGCTTAATTCAGTCATCTTTTTTCTGGGGCTATTTACTCACTCAGATTCTTGGTGGCATATGGGCAGACAAACTTGGTGGGAAGGTAGTGCTAGGTTTCGGAGTTGTTTGGTGGTCAATGGCAACAATTTTAACACCGATTGCGGCAAGACTTGGACTGCCTTATTTGCTTATTATGCGTGCCTTTATGGGAATTGGTGAGGGTGTAGCGATGCCTGCCATGAATAATATACTGTCCAAGTGGATTCCAGTTTCAGAAAGAAGTAGATCACTTTCGCTAGTATATAGCGGCATGTACCTTGGTTCTGTGGTAGGCTTGGCATTCTCACCTTTTCTGATCCAAAACCTTGGGTGGCCATCGGTGTTTTACTCGTTTGGATCCCTTGGAAGTATTTGGTTTGCTTTTTGGTTGCAAAAAGCATATAGCTCACCGAAGGATGACCCGGATCTCGGGGCAGAGGAAAAAAGACTCATACTAGAAGGCGGTGTATCAAAAGTGCCTGTTTCGGATATTCCTTGGAAATTAATTCTATCAAAAGCACCTGTTTGGGCTCTTATAATCTCTCATTTCTGTCACAATTGGGGGACATTTATTCTATTAACATGGATGCCTACTTACTACAATCAGGTTCTGAAGTTCAACCTCACAGAATCTGGGCTCTTATGCGTTCTTCCGTGGCTAACCATGGCTGTTTTTGCAAATATCGGAGGATGGATAGCTGACACCTTAGTTAGCAAAGGCATTTCCATAACAGCTGTTCGAAAAATCATGCAATCAATCGGGTTTTTGGGTCCCGCCTTTTTTCTGACACAACTAAGCCATGTCAAAACACCTACCATGGCAGTATTCTGCATGGCATGCAGCCAGGGATCTGATGCATTTTCACAATCTGGTCTTTATTCTAATCATCAAGACATTGGACCGCGATATGCTGGCGTGTTGCTGGGATTATCGAACACTGCGGGAGTTCTCGCTGGTGTCTTTGGCACAGCTGCAACTGGATACATACTCCAAAGAGGTTCTTGGAATGATGTGTTTAAGGTTTCTGTTGCATTGTACATTATAGGCACATTGGTATGGAATATCTTTTCAACTGGGGAGAAGATTCTTGACTAA 1599 0.4221 MAISGLISNTNFTSFIASGNYQLRKDVSLQRGSIFSVHHGGQIAKNPFARTRSHIEQREVYGLEVRKLSKVNRACVHYRSEEYDIDETKVDSVVSDEGTDEAIQLKGNGAPVSPWWRKLPKRWLIVLLCFTAFLLCNMDRVNMSIAILPMSQEFNWNSTTVGLIQSSFFWGYLLTQILGGIWADKLGGKVVLGFGVVWWSMATILTPIAARLGLPYLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQNLGWPSVFYSFGSLGSIWFAFWLQKAYSSPKDDPDLGAEEKRLILEGGVSKVPVSDIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGISITAVRKIMQSIGFLGPAFFLTQLSHVKTPTMAVFCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01539 532 ProSiteProfiles Major facilitator superfamily (MFS) profile. 125 529 IPR020846 GO:0022857
Vifa5g01539 532 Pfam Major Facilitator Superfamily 129 490 IPR011701 GO:0022857|GO:0055085
Vifa5g01539 532 FunFam ascorbate transporter, chloroplastic isoform X2 120 309 - -
Vifa5g01539 532 SUPERFAMILY MFS general substrate transporter 111 524 IPR036259 -
Vifa5g01539 532 Gene3D MFS general substrate transporter like domains 329 530 IPR036259 -
Vifa5g01539 532 Gene3D MFS general substrate transporter like domains 120 309 IPR036259 -
Vifa5g01539 532 FunFam ascorbate transporter, chloroplastic isoform X1 330 530 - -
Vifa5g01539 532 CDD MFS_SLC17A9_like 126 525 IPR044777 -
Vifa5g01539 532 PANTHER SOLUTE CARRIER FAMILY 17 115 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01539 Vifa-Chr5 448706259 448709270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01539 1 532 Organic Solute Cotransporters AT4G00370 75.137 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01539 K08193 - gmx:100784401 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01539 5 448706259 448709270 Vifa5g01539 5 448706259 448709270 ECH
Vifa5g01539 5 448706259 448709270 Vifa4g00657 4 188067561 188071887 PCT