Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00657 ATGGATAGGAACTTGATGATCAAAGAATTGCAAGAGCAGCTGTTAAAGACTCAAGATGTGATGAAAAGCCAAGCTAACAAGCATAGAAGGGAAGTGGAGTATGAAGTATGGGAGATGGTATTCTTAAAAATTCAACCTTATAAGGTGAAGAAGTTAGCCAAAAGATCGAATCAGAAGCTCAGTCCTAGATATTATGGACCCTATGAAGTGATTCAAAGAATTGGAGCTCAGTCCTCGTTACTGAAGAAAGCTATTATGCCATCTGCTGAATCCCAACCTTTGCCAGATTGCATGAATGAAGATTGGTACCTAGAACATATGCCTGAGAAAGTGATGAACTATAGGTGGAATGACCAGGGGGATTGGGAAGTACTGGTAAATATGAGTATAGCAATACTTCCAATGTCACAAGAGTTCAACTGGAACAGTGCAACAGTTGGCCTCATTCAGTCCTCTTTTTTCTGGGGTTATCTACTTACTCAGATTGTTGGTGGCATTTGGGCAGACAAAGTTGGTGGAAAGCTAGTACTTGGTTTTGGAGTTGTGTGGTGGTCAATTGCAACCGTTTTAACACCTATTGCTGCAAAACTTGGGCTTCCGTATCTGCTTGTTATGCGTGCTTTTATGGGAATTGGCGAGGGTGTTGCTATGCCTGCAATGAATAATATACTTTCCAAGTGGGTTCCGGTATCAGAGAGAAGCCGATCACTTGCACTAGTTTATAGTGGCATGTACCTTGGTTCTGTCACAGGATTGGCATTTTCACCTTTTCTAATCCACAAATTTGGGTGGCCATCTGTGTTCTACTCATTTGGATCACTTGGAAGTATCTGGTTTGCCTTGTGGTTGAGAAAAGCATACAGCACGCCAAAAGACGATCCAGATCTTGGGGTGGAAGAGAAAAGGCTCATACTTGGAGGCAGCGTATCAAAAGAACCTGTGACAGTTATTCCTTGGAAATTGATTTTATCAAAAGCACCTGTCTGGGCTTTAATAATCTCTCATTTCTGCCACAATTGGGGGACATTTATTCTATTAACCTGGATGCCTACATACTACAATCAGGTTCTGAAGTTCAACCTCACGGAATCTGGGCTCTTATGTGTCCTTCCATGGTTAACCATGGCAATTTTTGCGAATATAGGAGGTTGGATTGCTGACACACTTGTGAGCAAAGGCCTTTCCATAACAACTGTTCGAAAGATCATGCAATCGATTGGGTTTCTGGGTCCTGCATTTTTTCTTACACAGCTAAGTAATGTCAGAACACCCGCCATGGCAGTACTGTGCATGTCTTGCAGTCAGGGATGTGATGCATTCTCACAATCTGGTCTTTATTCCAATCACCAAGACATTGGACCGCGCTATGCCGGAGTGTTACTGGGACTATCAAATACTGCAGGAGTGCTTGCTGGTGTCTTTGGTACAGCTGCGACTGGATACATACTCCAACGAGGTTCATGGAATGATGTATTTAAAGTCTCAGTTGTATTGTACTTAATTGGCACTTTGGTCTGGAATATCTTTTCAACTGGTGAGAAAATTCTAGACTGA 1554 0.4234 MDRNLMIKELQEQLLKTQDVMKSQANKHRREVEYEVWEMVFLKIQPYKVKKLAKRSNQKLSPRYYGPYEVIQRIGAQSSLLKKAIMPSAESQPLPDCMNEDWYLEHMPEKVMNYRWNDQGDWEVLVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQIVGGIWADKVGGKLVLGFGVVWWSIATVLTPIAAKLGLPYLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHKFGWPSVFYSFGSLGSIWFALWLRKAYSTPKDDPDLGVEEKRLILGGSVSKEPVTVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVSKGLSITTVRKIMQSIGFLGPAFFLTQLSNVRTPAMAVLCMSCSQGCDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVVLYLIGTLVWNIFSTGEKILD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00657 517 SUPERFAMILY MFS general substrate transporter 125 509 IPR036259 -
Vifa4g00657 517 CDD MFS_SLC17A9_like 126 510 IPR044777 -
Vifa4g00657 517 Coils Coil 7 27 - -
Vifa4g00657 517 Gene3D MFS general substrate transporter like domains 123 294 IPR036259 -
Vifa4g00657 517 FunFam ascorbate transporter, chloroplastic isoform X1 315 515 - -
Vifa4g00657 517 FunFam ascorbate transporter, chloroplastic isoform X2 123 294 - -
Vifa4g00657 517 ProSiteProfiles Major facilitator superfamily (MFS) profile. 94 514 IPR020846 GO:0022857
Vifa4g00657 517 Pfam Major Facilitator Superfamily 127 475 IPR011701 GO:0022857|GO:0055085
Vifa4g00657 517 Gene3D MFS general substrate transporter like domains 322 514 IPR036259 -
Vifa4g00657 517 PANTHER SOLUTE CARRIER FAMILY 17 126 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00657 Vifa-Chr4 188067561 188071887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00657 126 517 Organic Solute Cotransporters AT4G00370 89.796 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00657 K08193 - gmx:100793618 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00657 4 188067561 188071887 Vifa4g00657 4 188067561 188071887 ECH
Vifa5g01539 5 448706259 448709270 Vifa4g00657 4 188067561 188071887 PCT