Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01538 ATGTCGGAGATCGACATGTCAGTTATTAAACCAGAGATGATGAAGCCCTATATTTGGCTTCAGACTTCGGATGGTTCCATCCAACAGGTGGAGCAAGAAATCGCAATGTTTTGCCCTTTCATTTGTCAAGAAATTATACAAAAAGGCGCCGGTTCTTCCAAAAATTGTGCCATATGCCTTCCTGAAAAAGTCACTCCTGCTATGTTGAGTTTAGTTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCCAACAAGGAACGAAAGTCTCATGATGAAAGATTCATAAGGATGGATACCAAACGACTCTGTGATTTGACATCTGCCGCAGACAGCCTTCAGTTGAGGCCGCTGGTTGATCTTACAAGTCGCACACTTGCAAGAATAATTGAAGGAAAATCTCCCGAGGAGATACGGGAGATATTTCATTTGCCGGATGATCTCACAGAGGAAGAGAAGTTGGAGCCTCTGAAAAACACAACCGATGACCCGAGGATAAGGCTTTTGAACCGGTTGTATGCGAAAAAAAGGAAAGAGCTAAAAGAGCGTGGGAGATTAAAGAATGCTGAATTAGAAGGAGAGCATGTAGATGAACGCTCGGTTGATGAACTTTTGTCTTTTATTAATGGAAATGATGAAGATTCAAAAGGGTCCAAAACTTCTAAGAGTAAAAAGAAGAATAGAAGGAAAAAAGAGCAGAAGAAGAGCTCTCTTTTAACTGAAGCTTCCAAACCGAAAAAGGAGTTAAGTGGTCATAGTTCTGTATCTGATAAAATCGCTGGAACCTCAAATAATCATACAGAAGATGACACATTTAGTCATAAAGAGTTTGATGATGACGATGATGGAGATGTAGATGATGAGATTGATCCTGCACTACAGGAAAAAATTGACAGGGAAGTAGAAGATTTTGCCCGTCGTTTAAATTCCGACTGGCCAGAAAGGATGCAAGAATTTTTATCATCAGGGCAAGAAAGGAAGTCAACGCTTTTTGCTTCCAACGGGAATGGTCTTCTAAGGCGAAATATTTGA 1035 0.4048 MSEIDMSVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPFICQEIIQKGAGSSKNCAICLPEKVTPAMLSLVLDYCRFHQVPGRSNKERKSHDERFIRMDTKRLCDLTSAADSLQLRPLVDLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERGRLKNAELEGEHVDERSVDELLSFINGNDEDSKGSKTSKSKKKNRRKKEQKKSSLLTEASKPKKELSGHSSVSDKIAGTSNNHTEDDTFSHKEFDDDDDGDVDDEIDPALQEKIDREVEDFARRLNSDWPERMQEFLSSGQERKSTLFASNGNGLLRRNI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01538 344 SMART skp1_3 15 116 IPR001232 GO:0006511
Vifa5g01538 344 SUPERFAMILY POZ domain 16 80 IPR011333 -
Vifa5g01538 344 SUPERFAMILY Skp1 dimerisation domain-like 91 160 IPR036296 GO:0006511
Vifa5g01538 344 PANTHER SKP1 14 154 IPR016897 GO:0006511
Vifa5g01538 344 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Vifa5g01538 344 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Vifa5g01538 344 MobiDBLite consensus disorder prediction 235 254 - -
Vifa5g01538 344 MobiDBLite consensus disorder prediction 208 289 - -
Vifa5g01538 344 MobiDBLite consensus disorder prediction 275 289 - -
Vifa5g01538 344 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Vifa5g01538 344 FunFam SKP1-like protein 21 isoform X1 12 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01538 Vifa-Chr5 448410604 448414470 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01538 - - gmx:100809439 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01538 5 448410604 448414470 Vifa5g01538 5 448410604 448414470 ECH
Vifa4g00653 4 187405499 187410011 Vifa5g01538 5 448410604 448414470 ECH
Vifa5g01538 5 448410604 448414470 Vifa4g00653 4 187405499 187410011 PCT