Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00653 ATGTCAGAAATTGACATGGCAGTTATTAATCCTGAGATGATGAAACCTTATGTGTGGCTTCAAACTTCCGATGATTCAATCCAACAAGTGGAACAAGAGATTGCGATGTTTTGCCCATTTATATGTCAAGAAATAATACAAAAAAGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTATTGCCGATTTCATCAAGTACTAGGCCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAAATTCGTCAGGATAGACACAGAGCGGCTCTGTGAGTTGACGTCTGCTGCGGACAGTCTTCAGTTAAAGCCATTGGTTGATCTCACCAGTCGTGCACTAGCTCGAATAATCGAAGGAAGATCACCAGAGGAGATACGTGACATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAATTGGAGCCCTTGAGAAACATAACTGACGATCCAAGGATCAGGCTTTTGAATCGCTTGTATGCCAAGAAGAGGAAAGAACTTAAAGAGCGTGAAAGGATAAAGGCCTTGTCAAAAGACCTGTTTACCCCTTACAATTTCAAATCCAGTGGTTTAACATTAGCACAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGATCAGTTGATGACCTTTTATCTTTTATTAATGGAAATGATGGAGATCAGAAGGGGATTAAAACTTCTAAAAATAAAAAGAAGAATCGAAGGAAAAAAGACCAACAGAAGAATTCTTCTTTGAAGGAAGCATCTGTACCAGAAAAGAAGGAGGAGGTAAACGGTCATAACAACAGACACCATAGTTCGGAAGCTGATAGACCGCAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAA 906 0.3974 MSEIDMAVINPEMMKPYVWLQTSDDSIQQVEQEIAMFCPFICQEIIQKSMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVLGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKALSKDLFTPYNFKSSGLTLAQNVEVEEEHVDERSVDDLLSFINGNDGDQKGIKTSKNKKKNRRKKDQQKNSSLKEASVPEKKEEVNGHNNRHHSSEADRPQKLTGKWKILPAD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00653 301 PANTHER SKP1 14 155 IPR016897 GO:0006511
Vifa4g00653 301 MobiDBLite consensus disorder prediction 229 301 - -
Vifa4g00653 301 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Vifa4g00653 301 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Vifa4g00653 301 Gene3D Potassium Channel Kv1.1; Chain A 14 161 IPR011333 -
Vifa4g00653 301 MobiDBLite consensus disorder prediction 256 291 - -
Vifa4g00653 301 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Vifa4g00653 301 Coils Coil 244 264 - -
Vifa4g00653 301 SMART skp1_3 15 116 IPR001232 GO:0006511
Vifa4g00653 301 SUPERFAMILY Skp1 dimerisation domain-like 90 158 IPR036296 GO:0006511
Vifa4g00653 301 SUPERFAMILY POZ domain 16 80 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00653 Vifa-Chr4 187405499 187410011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00653 - - gmx:100794666 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00653 4 187405499 187410011 Vifa4g00653 4 187405499 187410011 ECH
Vifa4g00653 4 187405499 187410011 Vifa5g01538 5 448410604 448414470 ECH
Vifa5g01538 5 448410604 448414470 Vifa4g00653 4 187405499 187410011 PCT