Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01537 ATGGATTTCACTGTGTTCTTCTCTGTGTTCATGCTTTTTCTTGGTATGAGTTTTGCTGGTGATATAGTACACCGTGATGATAATTCTCCCAAGAGGCCTGGATGTGAAAACAACTTTGTTCTGGTTAAAGTTCCAACTTGTATTGATGGTGTGGAAAGTGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGCCCTACATTGGAATCAAAAGAAAAGCGTGCAAACCATACTAGAGTTGCCATTGCAGACCCTCCTGATTGTTGTAGCAGTCCTAAGAATAAGCTTACGGGCGAGGTCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCGGCCATCCTGATTATAAATAACCGTGCAGAACTTTTCAAGATGGTTTGTGAAAAGAATGAAACCGATGTTGATATTGGAATACCTGTTGTCATGCTTCCACAAGATGCTGGTGAAACCTTAGAAAATTATATACAAAATAAGTCCACAGTTTCCGTGCAGTTATACTCTCCACGGCGTCCATCGGTCGATGTTGCAGAAGTATTTCTATGGCTTATGGCTGTTGGTACCATTATCTGCGCTTCTTACTGGTCCGCCTGGACAGCCAGAGAGGAAGTTATTGAGCGCGAGAAGCTATTAAAGGATGATTCAGATGAGTATATAAATAAGGAGAATGCTGGTTCGAGTCCTTATTTGGAAATAAGTACTACAGCAGCAGTTTCGTTCGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAACTAATGGCGTTCTGGTTTGTTGAAGTTCTGGTTGTTCTATTTTGCATCGGAGGAGTTGAGGGACTGCAAACTTGCTTGGTAGCTCTTTTATCATGTTTCGGCTGGTCTCAACGTGCTGCGCAAACATACGTGAAAATACCTTTCTTCGGTGCTCTCTCATATCTCACGCTTGCTGTTACTCCCTTTTGCATAGTGTTTGCTGTGGTTTGGGGAGTTAAACGCCGTGTATCGTACGCTTGGATTGGTCAAGATATTCTTGGTATTGCTTTGATAATTACAGTTCTTCAGATTGTCCATATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGCTGTGCCTTCCTATATGACATCTTCTGGGTGTTTCTCTCTAAATTAATATTCCATGAGAGTGTGATGATAGTGGTAGCTCGCGGTGATAGGAGTGGAGAAGATGGTATTCCAATGCTGCTTAAGATACCGCGTATGTTTGATCCTTGGGGTGGTTACAGTGTCATCGGTTTCGGGGACATAATCTTACCGGGGCTTCTAGTAGCCTTTTCATTAAGGTATGATTGGTTAGCGAAGAGGAATCTTCGATCAGGATACTTCTTGTGGGCGATGAGTGCATATGGTTTAGGTCTCCTCGTCACATACATAGCTTTGAATTTGATGGACGGACGTGGTCAACCAGCTTTGTTGTATATAGTCCCATTTACCCTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAACTCAAGATTTTGTGGACAAGAGGGCAACCAAAATTGCCTTGCCCTCACATCCAAGAGGATCATCAACCAACGGACCATTAA 1608 0.4279 MDFTVFFSVFMLFLGMSFAGDIVHRDDNSPKRPGCENNFVLVKVPTCIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSSPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINNRAELFKMVCEKNETDVDIGIPVVMLPQDAGETLENYIQNKSTVSVQLYSPRRPSVDVAEVFLWLMAVGTIICASYWSAWTAREEVIEREKLLKDDSDEYINKENAGSSPYLEISTTAAVSFVVIASCFLVMLYKLMAFWFVEVLVVLFCIGGVEGLQTCLVALLSCFGWSQRAAQTYVKIPFFGALSYLTLAVTPFCIVFAVVWGVKRRVSYAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFLYDIFWVFLSKLIFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKRNLRSGYFLWAMSAYGLGLLVTYIALNLMDGRGQPALLYIVPFTLGTFLSLGKKRGELKILWTRGQPKLPCPHIQEDHQPTDH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01537 535 SUPERFAMILY PA domain 94 134 IPR046450 -
Vifa5g01537 535 Pfam PA domain 85 162 IPR003137 -
Vifa5g01537 535 SMART psh_8 238 507 IPR006639 GO:0004190|GO:0016020
Vifa5g01537 535 FunFam Signal peptide peptidase-like 3 41 180 - -
Vifa5g01537 535 Pfam Signal peptide peptidase 240 517 IPR007369 GO:0004190|GO:0016020
Vifa5g01537 535 Gene3D - 26 179 - -
Vifa5g01537 535 PANTHER SIGNAL PEPTIDE PEPTIDASE 64 526 IPR007369 GO:0004190|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01537 Vifa-Chr5 448405634 448409294 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01537 K09597 - gmx:100808921 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01537 5 448405634 448409294 Vifa5g01537 5 448405634 448409294 ECH
Vifa5g01537 5 448405634 448409294 Vifa4g00652 4 187400865 187404507 PCT