Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00652 ATGGTTTCATTGGAAGCTATACGTAGTGTTGCTTATGTGTTATTGTTTGGTGTTTCTTTGGTTTTGGCTGGTGATATAGTTCATCATGATGATGTTGCTCCCACAAGGCCTGGCTGTGAGAACAACTTTGTTCTGGTGAAGGTTCCAACTTGGATCGATGGTGTGGAGAACGATGAGTATGTTGGTGTCGGTGCAAGATTCGGTCCTACATTAGAATCCAAAGAAAAACATGCCACTCATACCAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTAGCAAACCTAAGAATAAGCTCACCAGTGAGATCATTTTGGTGCACCGAGGAAAATGTAGCTTCACAACCAAGGCAAATATAGCTGATGAAGCCGGTGCTTCAGCCATTATCATTATAAACAATCGTACAGAACTTTTCAAGATGGTTTGTGAGGTAAATGAAACTGATGTTGATATTGGAATTCCTGCTGTTATGCTTCCACAAGATGCTGGCTTAAACTTGGAAAGACACATACAAAATAAATCGATAGTGGCCATACAGTTATACTCTCCACTGCGTCCATTGGTTGATGTTGCGGAAGTGTTTTTATGGCTTATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCTTGGACTGCGAGAGAAGCCGTTATTGAGCAAGACAAGCTTTTAAAGGATGCTTCAGAAGAATATGTTGCAGAAAGTGTTGGTTCTCGTGGTTACGTGGAAATCAGTACTACAGCAGCGATTTTATTCGTTGTGCTTGCTTCTTGTTTCTTGGTTATGCTGTACAAATTAATGTCGTTATGGTTTGTTGAAGTTCTGGTAGTTCTATTTTGCATTGGCGGGATAGAGGGACTGCAAACTTGTTCGGTGGCTCTATTATCATGTTTCAGATGGTTTCGACATCCTGCGCAAACATATGTGAAGATACCGTTCTTTGGAGCTGTTCCATATCTGACACTTGCTATTACTCCCTTCTGCATAGTGTTTGCGGTTGTTTGGGCAGCTAAACGTCACGCGCCGTATGCGTGGATTGGTCAAGATATTCTTGGTATCGCGTTGATAATTACAGTTCTTCAAATTGTTCGCATTCCAAATCTCAAGGTTGGGACTGTTCTGCTAAGTTGTGCTTTCCTATATGACATCTTATGGGTCTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATTCCCATGCTTCTCAAATTACCGCGTTTATTTGATCCTTGGGGTGGTTATAGCATCATCGGTTTTGGGGACATAATCTTACCGGGACTTCTAGTAGCATTTTCACTAAGATATGATTGGTTGGCAAAGAAAAACCTTCGAGCCGGATACTTTGTGTGGGCTATGACTGCTTATGGTTTAGGTCTTCTCGTCACATATGTGGCTTTAAACTTGATGGATGGACATGGCCAGCCAGCTTTGCTCTATATAGTGCCGTTTACACTTGGAACCTTTTTGTCACTGGGAAAGAAAAGAGGTGATCTGAAGATTTTGTGGACAAGAGGAGAACCAGAAAGGCCTTGTCCTCATATTCAAGAAGTTAACCAACCAATCAGTTAA 1614 0.4188 MVSLEAIRSVAYVLLFGVSLVLAGDIVHHDDVAPTRPGCENNFVLVKVPTWIDGVENDEYVGVGARFGPTLESKEKHATHTRVVMADPPDCCSKPKNKLTSEIILVHRGKCSFTTKANIADEAGASAIIIINNRTELFKMVCEVNETDVDIGIPAVMLPQDAGLNLERHIQNKSIVAIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAVIEQDKLLKDASEEYVAESVGSRGYVEISTTAAILFVVLASCFLVMLYKLMSLWFVEVLVVLFCIGGIEGLQTCSVALLSCFRWFRHPAQTYVKIPFFGAVPYLTLAITPFCIVFAVVWAAKRHAPYAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDILWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKLPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRAGYFVWAMTAYGLGLLVTYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGDLKILWTRGEPERPCPHIQEVNQPIS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00652 537 SMART psh_8 241 510 IPR006639 GO:0004190|GO:0016020
Vifa4g00652 537 SUPERFAMILY PA domain 99 138 IPR046450 -
Vifa4g00652 537 FunFam Signal peptide peptidase-like 3 45 184 - -
Vifa4g00652 537 Pfam PA domain 89 166 IPR003137 -
Vifa4g00652 537 Pfam Signal peptide peptidase 241 521 IPR007369 GO:0004190|GO:0016020
Vifa4g00652 537 PANTHER SIGNAL PEPTIDE PEPTIDASE 68 526 IPR007369 GO:0004190|GO:0016020
Vifa4g00652 537 Gene3D - 39 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00652 Vifa-Chr4 187400865 187404507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00652 K09597 - gmx:100779540 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00652 4 187400865 187404507 Vifa4g00652 4 187400865 187404507 ECH
Vifa5g01537 5 448405634 448409294 Vifa4g00652 4 187400865 187404507 PCT