Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01415 ATGGGGTTGTTTTTTGGGATGTTTTTGGGGATATTATTTGGTGTAGCGTTGATGGCTGGATTGGAACGGATGATGAGGTATAGAAGCGCTAAGCGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGATCCCTTAATAGAGACGACTTGAAGAAAATTTGTAGTGAAAATTTACCTGAATGGATATCTTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTGCTGTCCAAATTGTGGCCATTTGTAGCAGATGCAGCAACTATGGTGATAAGAGAATCTGTTGAACCACTATTAGAAGAGTATAGACCTACTGGAATTACTTCGTTGAAGTTCAGTAAGCTGTCCCTTGGAAATGTCGCTCCAAAAATTGAAGGTATTCGTGTTCAGAATCTTAAAAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCCAGTATTGTTTTGGCTGTTGAAGCTGCACTTGTTGCATCAATTCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTCGCTGAAGAGATCCCCTGCATTTCCGCTGTTGTTGTTGCCCTACTTGCTGAGCCGAAGCCTCGGATTGATTACACTCTGAAGGCTGTTGGTGGAAGTTTGACGGCACTTCCTGGAATTTCAGATATGATAGATGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGTGGTGTTCCTGTGGATACTAGTGAACTGGAGCTTAAACCCCAAGGAATGCTTAGAGTGACTGTAATAAAAGCAAATGATCTAAAAAACAAGGAAATGATTGGGAAGTCTGATCCTTACACAGCTGTGTATATCCGGCCACTTTTTAAAGTTAAAACGAAGGTCATTGATAACAACTTGAATCCGATTTGGAATGAAGAATTTGACTTAATTGCAGAAGACAAGGAGACCCAGTCACTCACTCTCGAGGTTTTTGATAAAGACATTGGACAAGATAAACGGCTGGGAATAGCAAAATTGCCACTTATCGACATGGAAATAGAAACTGAAAAGGAAATTGAATTGAGGCTTTTGTCATCGCTTGATACGCTGAAAGTGAAAGATAAGAAGGATCGAGGAACCTTGAGAATAAAGTATTTCTATCACGTATTTAACAAGGAAGAACAGCTGGCTGCACTAGAAGCAGAGAAAATGACACTAGAACAAAGGAAGAAATTGAAAGAGGAAGGAGTCATAGGAAGTACAATGGACGCGCTAGACGGAGTAGCATCAGTAGCCGGGTCTGGTGTTGGACTTGTTGGTTCCGGTGTAACAACAGTAGCCGGGACTGGTGTTGGACTTGTTGGTTCTGGTGTTACTGCCGGTGCAGGACTTGTTGGTTCTGGTGTTACTGCCGGTGCTGGAATTGTTGGCAGCGGGTTTGGCGCTGTCGGTAGTGGATTTGGTGCTGTTGGCAGTGGACTGACCAAGGCTGGAAAGTTCATGGGCAGGACAATCACAGGGCAAGCTGTATCCAGAAGGAGTGGTTCATCTATTCCTTCGGAGGAGAGTGGTGCTGTGAAGAAATGA 1593 0.4288 MGLFFGMFLGILFGVALMAGLERMMRYRSAKRIAKAVDIKLLGSLNRDDLKKICSENLPEWISFPVYEQVKWLNKLLSKLWPFVADAATMVIRESVEPLLEEYRPTGITSLKFSKLSLGNVAPKIEGIRVQNLKKGQIIMDIDFRWGGDPSIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGVPVDTSELELKPQGMLRVTVIKANDLKNKEMIGKSDPYTAVYIRPLFKVKTKVIDNNLNPIWNEEFDLIAEDKETQSLTLEVFDKDIGQDKRLGIAKLPLIDMEIETEKEIELRLLSSLDTLKVKDKKDRGTLRIKYFYHVFNKEEQLAALEAEKMTLEQRKKLKEEGVIGSTMDALDGVASVAGSGVGLVGSGVTTVAGTGVGLVGSGVTAGAGLVGSGVTAGAGIVGSGFGAVGSGFGAVGSGLTKAGKFMGRTITGQAVSRRSGSSIPSEESGAVKK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01415 530 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Vifa5g01415 530 SMART C2_3c 265 362 IPR000008 -
Vifa5g01415 530 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Vifa5g01415 530 CDD SMP_SYT 59 248 - -
Vifa5g01415 530 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Vifa5g01415 530 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 416 IPR045050 GO:0008289
Vifa5g01415 530 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Vifa5g01415 530 PRINTS C2 domain signature 306 319 IPR000008 -
Vifa5g01415 530 PRINTS C2 domain signature 328 336 IPR000008 -
Vifa5g01415 530 PRINTS C2 domain signature 281 293 IPR000008 -
Vifa5g01415 530 FunFam synaptotagmin-4 isoform X1 259 417 - -
Vifa5g01415 530 Pfam C2 domain 264 355 IPR000008 -
Vifa5g01415 530 Gene3D C2 domain 259 418 IPR035892 -
Vifa5g01415 530 Coils Coil 391 418 - -
Vifa5g01415 530 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01415 Vifa-Chr5 420402081 420409559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01415 249 350 Lipid Metabolism Gene Families AT3G61300 31.068 2.60e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01415 - - gmx:100785209 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01415 5 420402081 420409559 Vifa4g00716 4 208950606 208954352 PCT