Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00716 ATGGGTTTGATTTCTGGGATTTTCATGGGGATGGTGTTTGGCATAGCATTGATGGCTGGATGGGCTCGTATGATGAGATACAGAAGTGCTAAGAGGATTGCAAAGGCTGTTGACATCAAACTCCTTGGATCCCTCAACAGAGATGATCTGAAGAAAATTTGCGGTGAAAATCTTCCCGAATGGATATCTTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTCCTGAGCAAACTCTGGCCATTTGTGGCAGAAGCCGCAACGTTGGTTATCCGAGAGTCTGTTGAACCTCTACTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGTAAGCTGTCACTTGGAAACGTAGCTCCAAAAGTTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATAGATTTCCGTTGGGGTGGTGATCCAAGTATCATTTTGGCGGTTGAAGCTGCCCTTGTTGCATCAATCCCAATTCAGTTGAAGGATCTAAAAGTTTTCACAATTATCCGTGTTATATTCCAACTTGCTGAAGAGATACCTTGCATTTCTGCTGTTGTTGTTGCTCTACTGGCCGAGCCCGAGCCAAAAATTGATTATACTCTGAAAGCTGTTGGTGGAAGCTTAACTGCTCTTCCTGGAGTTTCAGATATGATTGAGGATACCGTGAACGCGATTGTTAATGATACACTCAAATGGCCCCATAGAATTGTTGTTCCACTTGGTGGTATCCCTGTCGATATTAGTGAACTGGAGCTTAAACCTCAAGGAAGACTTGAAGTGACTGTGGTGAAAGCGACCGATTTAAAAAACAAGGAAATGATTGGAAAATCAGATCCTTACGTTGTTTTGTATATTCGACCCTTATTTAAAGTTAAAACCAAGGTCATTGACAACAACTTGAATCCTGTTTGGGATCAAACATTTGAATTGATTGCAGAAGACAAGGAGACTCAGTCAGTGATTTTTGAGGTTTTTGATGAAGACATTGGACAAGATAAGCGATTGGGAATTGTGAAATTACCTCTTATTGATCTGGAAGTACAAACCGAAAAGGAGTTTCAGTTGGGATTGCTGTCATCGCTCGATACACTCAAGGTTAAAGATAAGAAGGATCGAGGAACCTTAACTGTAAAGGTTATGTATTACCAGTTTAACAAAGAGGAGCAACTGGCTGCACTAGAAGCAGAAAAAACTATATTAGAAGAAAGGAAGAAAATGAAAGCGGCGGGGGTGATTGGCAGCACAATGGACGCACTGGACGGAGCAGTGTCGGTGGTGGGATCTGGTGCTGGACTCGTTGGAAGTGGCATTGGCGCGGGAGCTGGAGTTGTCACGAGTGGTCTTGGAACGTTCACTAGCGGTCTTACCAAGGCGGGAAAGTTTATGGGAAGAACCATAACAGGTCATCATAGCGGGTCAAGAAGGAGCGGTTCATCTACTCCGGTTCATAATGCAGCGGAAAACGGTGGTGGTGCAAAGCCTCTATAG 1512 0.4345 MGLISGIFMGMVFGIALMAGWARMMRYRSAKRIAKAVDIKLLGSLNRDDLKKICGENLPEWISFPVYEQVKWLNKLLSKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKVEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPEPKIDYTLKAVGGSLTALPGVSDMIEDTVNAIVNDTLKWPHRIVVPLGGIPVDISELELKPQGRLEVTVVKATDLKNKEMIGKSDPYVVLYIRPLFKVKTKVIDNNLNPVWDQTFELIAEDKETQSVIFEVFDEDIGQDKRLGIVKLPLIDLEVQTEKEFQLGLLSSLDTLKVKDKKDRGTLTVKVMYYQFNKEEQLAALEAEKTILEERKKMKAAGVIGSTMDALDGAVSVVGSGAGLVGSGIGAGAGVVTSGLGTFTSGLTKAGKFMGRTITGHHSGSRRSGSSTPVHNAAENGGGAKPL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00716 503 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Vifa4g00716 503 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Vifa4g00716 503 PRINTS C2 domain signature 328 336 IPR000008 -
Vifa4g00716 503 PRINTS C2 domain signature 306 319 IPR000008 -
Vifa4g00716 503 PRINTS C2 domain signature 281 293 IPR000008 -
Vifa4g00716 503 SMART C2_3c 265 362 IPR000008 -
Vifa4g00716 503 Coils Coil 391 411 - -
Vifa4g00716 503 CDD SMP_SYT 59 248 - -
Vifa4g00716 503 FunFam synaptotagmin-4 isoform X1 259 417 - -
Vifa4g00716 503 MobiDBLite consensus disorder prediction 471 503 - -
Vifa4g00716 503 MobiDBLite consensus disorder prediction 477 493 - -
Vifa4g00716 503 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 437 IPR045050 GO:0008289
Vifa4g00716 503 Gene3D C2 domain 259 417 IPR035892 -
Vifa4g00716 503 Pfam C2 domain 264 359 IPR000008 -
Vifa4g00716 503 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Vifa4g00716 503 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Vifa4g00716 503 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00716 Vifa-Chr4 208950606 208954352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00716 266 358 Lipid Metabolism Gene Families AT4G00700 40.860 1.15e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00716 - - tpra:123895719 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00716 4 208950606 208954352 Vifa4g00716 4 208950606 208954352 ECH
Vifa5g01415 5 420402081 420409559 Vifa4g00716 4 208950606 208954352 PCT