Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01404 ATGGCTACATTGAAGACCTGTACTGGTGCTTGCTTCACAGGATCCGCTTTTCCGCTTCATCATTCCAATGTTACTACTAGTAACAAAAACACTAGGAGCTCTTGCTGGAAGCCTACACAAGCAGCTGTGAAATCCACTTTCCATCTCCCAATGCGTAGTTATGAGATGAAGAATAGGACTTGTACTGAGGACATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGCCTTGGTAAACATGCAGATTGAGAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGGCAACTAATGAGCTGGGAAGAACACATAATGCTTATTGCACACACAGTCAACTGTTTTGGCGGGAATATTAAGGTTATTGGAAATACTGGCAGTAACTCAACCAGGGAAGCAATTCATGCCACAGAGCAGGGTTTTGCGGTTGGAATGCACGGTGCCCTTCATATAAATCCTTACTATGGTAAAACCTCCTTGGATGGTATGGTTGCACACTTTCAAAGTGTGCTTTCCATGGGGCCCACGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCACACGTGATTCAAAACTTAGCTCAAAGTACTTGCTTAGCTGGTGTCAAGGAATGTGTGGGAAATGACCGAATCAAAGAGTATACTGATAATAAAATTGTTGTGTGGAGTGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAACCTGATTCCTGGCTTAATGCATGAACTCATGTTTGGGGGGAAAAATCCTGCATTGAATTCCAAGCTCCTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGCTGCCATTTGTACCTCTCCCTTTGCAGAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGACAGCATTTTGTTGGAACTCAAGACGTTCAGGTTCTTGATGACAACGACTTTTTCTTGGTTAGTCGTTATTAA 1104 0.433 MATLKTCTGACFTGSAFPLHHSNVTTSNKNTRSSCWKPTQAAVKSTFHLPMRSYEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNMQIENGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQSTCLAGVKECVGNDRIKEYTDNKIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMHELMFGGKNPALNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLQKRIEFANLVKEIGRQHFVGTQDVQVLDDNDFFLVSRY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01404 367 ProSitePatterns Dihydrodipicolinate synthase signature 1. 103 120 IPR020624 GO:0016829
Vifa5g01404 367 Gene3D Aldolase class I 61 367 IPR013785 -
Vifa5g01404 367 Pfam Dihydrodipicolinate synthetase family 68 341 IPR002220 GO:0016829
Vifa5g01404 367 CDD DHDPS 69 339 IPR005263 GO:0008840|GO:0009089
Vifa5g01404 367 PRINTS Dihydrodipicolinate synthase signature 168 184 IPR002220 GO:0016829
Vifa5g01404 367 PRINTS Dihydrodipicolinate synthase signature 136 154 IPR002220 GO:0016829
Vifa5g01404 367 PRINTS Dihydrodipicolinate synthase signature 100 121 IPR002220 GO:0016829
Vifa5g01404 367 PRINTS Dihydrodipicolinate synthase signature 191 208 IPR002220 GO:0016829
Vifa5g01404 367 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 70 340 IPR005263 GO:0008840|GO:0009089
Vifa5g01404 367 PANTHER DIHYDRODIPICOLINATE SYNTHASE 51 352 IPR002220 GO:0016829
Vifa5g01404 367 ProSitePatterns Dihydrodipicolinate synthase signature 2. 196 226 IPR020625 GO:0016829
Vifa5g01404 367 SMART DHDPS_2 66 343 IPR002220 GO:0016829
Vifa5g01404 367 SUPERFAMILY Aldolase 70 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01404 Vifa-Chr5 407782260 407784485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01404 K01714 - gmx:548067 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01404 5 407782260 407784485 Vifa5g01404 5 407782260 407784485 ECH
Vifa5g01404 5 407782260 407784485 Vifa4g00729 4 212221103 212222409 PCT