Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01400 ATGGCTTCTTCGGAAGCCGATTCCCGTCTCAGTCAAGTAATCGTCCCTGCACTCGAGAAAATTCTCAAGAACGCTTCGTGGAGAAAGCACGCTAAGCTCGCTCATGAGTGTAAATCCGTCACCGAAACGCTTACATCGAATCAGAAGCTTCAATCGCCAGCTTCCGAAGCTGTTGCGTCCGATAACGGTGAGCCCGAGGTTTCCGTACCTGGACCGCTTCACGACGGAGGTTCCGTTGAGTATTCGTTGGCAGAGTCTGAATCGATCCTATCCCCTCTCATCAACGCGGCTGGCTCCGGCGTATTGAAGATCGCCGATCCCGCTGTTGATGCTGTCCAGAAACTCATTGCTCTAGGTTACCTCCGCGGTGAGGCGGACGCGGCTGGAGAATGTCCGGAGTCGAAGCTTCTGGCGAGTTTGATTGAATCTGTGTGTAAGTGTCATGATCTAGGCGATGAGGCAATGGAACTTTTGGTCCTGAAGACGCTGTTGTCAGCTGTGACTTCAATTTCGCTAAGAATTCACGGTGATTGTTTGCTTTTGATTGTGAGGACCTGTTATGATATCTATTTGGGAAGTAAGAATGTGGTGAATCAAACTACGGCGAAAGCGTCGTTGATTCAGATGTTGGTGATTGTGTTTAGAAGAATGGAGGCAGATTCGTCTACTGTTCCAATTCAGCCGATTGTCGTGGCGGAATTGATGGATCCGGTGGAAAAATCTGATGTTGATAGCTCCATGACAGTGTTTGTGCAGGGTTTTATAACTAAAATTATGCAGGATATAGATGGGGTTTGGAACCCGTCGGGGACACCGAGTAAGGTTGCGGCCTTGACTCATGATGGTGCGTTTCAGACCACTGCGACGGTGGAGACCACTAATCCGGCGGATTTGTTGGATTCGACTGACAAGGACATGTTGGATGCGAAGTATTGGGAGATCAGTATGTATAAGACAGCTTTGGAGGATAGGAAAGGGGAGCTGGTGGATGGAGAGGTAGTTGAGAGGGATGATGATTTTGAGATTCAGATTGGGAATAAGCTGAGGAGAGATGCCTTTTTGGTGTTCAGGGCACTTTGTAAGTTGTCTATGAAGACACCCCCTAAAGAGGCCTCTGCTGATCCTCAGTTGATGAAGGGGAAGATTGTGGCTTTGGAGTTGTTGAAAATTTTGTTGGAGAATGCTGGAGCTGTCTTCAGAACTAGTGAAAGGTTTTTGGGTGCCATCAAGCAGTACTTATGCCTATCATTATTGAAGAACAGTGCTTCAACGCTTATGATCGTGTTTCAGTTATCATGTTCCATCTTCATCAGTCTGGTATCAAGATTTAGAGCTGGGTTGAAAGCTGAAATTGGAGTGTTTTTCCCCATGATTGTTCTCAGGGTTCTAGAAAATGTTGCTCAACCTAATTTTCAGCAAAAGATGATAGTGCTTCGTTTTCTAGAGAAACTTTGTCTTGATTCACAGATATTGGTCGACATATTTATCAATTATGACTGCGATGTCAATTCATCAAACATATTTGAAAGGATGGTCAACGGACTTCTTAAAACGGCCCAAGGTGTCCCTCCTGGTGTATCAACCACAGTTTTGCCACCTCAAGAGGCAACTCTAAAACTTGAAGCCATGAAATGTTTGGTTGCTATTTTAAAATCAATGGGAGACTGGATGAACAAGCAAATGCGCATTCCAGATCCTCATTCAAGCAAGAAAAGTGAAGCAGTTGATAACGGCCATGAAACTGGAGATTTTCCCATGGCAAATGGGAATGGAGAAGAACCAGTTGAAGGATCAGATACTCATCCTGAACTCTCCAATGAGGGGTCAGATGTTTCTACTATCGAGCAACGCCGGGCTTATAAACTAGAACTTCAGGAAGGTATATCACTTTTTAATAGGAAGCCAAAGAAAGGAATTGAGTTTCTCATCAAGGCCAACAAAGTGGGTAACTCACCTGAGGATATTGCTGCTTTTCTTAAAGATGCATCTGGGTTAAACAAGACTTTGATTGGTGATTATCTTGGAGAAAGGGAAGATTTATCCTTGAAAGTAATGCATGCCTATGTGGATTCTTTCGACTTTCAAGGGATGGAGTTTGATGAGGCAATCAGGATGTTTCTTCAAGGCTTTAGACTGCCTGGTGAGGCACAGAAAATTGATCGAATCATGGAAAAGTTTGCTGAACGTTATTGCAAATGTAATCAAAAAGTATTTTCTAGTGCTGATACAGCATATGTCCTTGCATATTCTGTAATTTTGTTGAACACTGATGCTCACAATCCTATGGTGAAAAACAAGATGTCTCCTGATGATTTCATAAAAAACAACCGTGGCATAGATGATGGAAAAGATCTACCAGAGGAATACTTGAGGTCATTGTTTGAGAGAATATCTAGAAATGAGATCAAAATGAAGGATGTTGATCTGGATCACCAACAAATACAGACAGTGAATCCTAACAGACTATTAGGCTTGGATAGTATATTGAATATTGTGGTCCGTAAGCGGGGGGATGACAATCATATGGGGACCAGTGATGATCTAATACGTCGTATGCAAGAAGAATTCAGAGAAAAAGCACGCAAAACTGAGTCAGTCTATTATGCAGCAACTGATGTAGTAATCCTTAGATTCATGATTGAAGTGTGCTGGGCACCGATGTTAGCTGCTTTTAGTGTTCCTCTTGACCAAAGTGATGATGAAATTGTAATAGCCCTGTGTCTTGAAGGCTTCCGCAATGCTGTTCACGTTACATCGGTAATGTCAATGAAGACACATCGAGATGCTTTTGTGACTTCATTAGCGAAGTTTACCTCCCTGCATTCTCCTGCTGATATTAAGCAGAAAAATATAGATGCAATCAAGACAATAGTTACTATTGCTGATGAGGATGGGAATTACTTGCAAGAAGCTTGGGAACATGTTTTGACCTGTGTTTCCCGATTTGAGCATCTACATCTTCTTGGAGAGGGGGCTCCACCAGATGCCACATTCTTTGCTTTTCCTCAGAATGATTCTGATAAAGTAAAGCAAACTAAAACAACTATTCTTCCAGTTTTGAAGAAGAAGGGGCCTGGGAGGATGCAGTATGCAGCTGCCTCGTTGATGCGTGGTTCATATGATAGTGCTGGAATTGGCAGTAATGCTGCTGGAGCTATCACATCAGAGCAGGTGAACAGTCTAGTTTCTAATTTGAATATGTTGGAACAAGTTGGAAGCTCAGAAATGAATCGGATATTCACGCGGAGTCAAAAGTTGAATAGTGAGGCCATAATAGACTTTGTTAAGGCTTTATGCAAGGTCTCCATGGAGGAACTAAGATCGCCATCCGATCCACGAGTTTTCAGCCTTACAAAGATAGTGGAGATTGCGCACTATAATATGAACCGCATCCGGCTTGTATGGTCAAGCATCTGGCATGTTCTTTCAGATTTCTTTGTAACCATTGGTTGTTCAGGAAACCTTTCGATTGCAATTTTTGCTATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTAGAGCGGGAAGAGTTGGCTAACTATAATTTCCAAAATGAATTTATGAAGCCTTTCGTGATTGTTATGAGAAAGAGTAATGCTGTTGAAATTAGAGAACTTATTATCAGATGTGTCTCTCAAATGGTTTTATCTCGTGTCAACAATGTCAAGTCAGGATGGAAGAGCATGTTCATGGTATTTACAACAGCAGCATATGATGACCACAAAAACATCGTACTCTTGGCTTTTGAAATTATTGAAAAGATTATTCGAGATTACTTTCCATACATCACTGAGACTGAAACTACCACCTTTACAGATTGTGTCAATTGTCTAATTGCATTCACCAATAGTAGATTTAACAAAGAGATTAGCCTTAATGCCATCACGTTTCTTCGATTCTGTGCAACAAAACTAGCTGAAGGAGAACTTGGCTCTTCGTCAAGGAATAAAGGCAAGGAAACTTTTGGAAAGATTTCCACAGCTTCACCTCGAACTGGAAAAGAGGGGAGACAAGATAATGGAGAGGTGACTGTCAAGGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCTGGTTTGTCTGAGCTTAGCTTTGACCCGAGGTCTGAGATAAGGCAGAGTGCTTTGCAAGTCCTATTTGAAACCTTACGCAACCATGGCCACCTCTTTTCACTGCCTTTATGGGAAAGAGTATTTGAATCAGTCCTATTCCCGATTTTTGATTATGTTCGTCATGCTATTGATCCTTCAGGAAGTAGCTCCCAGGTCAGTGAAGTGGAGACTGATGGTGAGCTTGATCAAGATGCATGGCTTTATGAAACATGCACATTAGCCCTCCAATTGGTGGTAGATCTTTTCATCAACTTCTACAGCACTGTTAATCCACTTTTGAAAAAGGTGCTGATGCTCCTTGTAAGCTTTATAAAGCGCCCTCATCAAAGCCTGGCCGGCATTGGTATTGCGGCATTTGTCCGTTTGATGAGTAATGCCGGGGAGTTGTTTTCTGATGAGAAGTGGTTAGAAGTGGTTATGACACTAAAGGATGCAGCAAATGCAACACTCCCTAGTTTTACGTTCCTTGATGGTGGGGACTTTGTAACTGGAAATGAGCCTGCTTCAACAGCTGAAGATGGCAGAGATCTTGCCGAGTCTAGCTCACATGACAATTTGGAAAGCCCGAGGACTGACCGTCTTTATGCTTATATATCTGATGCAAAATGTCGAGCAGCTGTTCAGCTTTTATTGATTCAGGCGGTGACGGAGATCTATAACTTATACCGTACTCAACTTTCAGCAAAAGCCATTCTAGTCCTCTTTGATACTTTGCATGATGTGGCATCACACGCTCACATGATTAACAGCAATACTATTTTACGCACCAAGTTACAAGAGTTTGGGTCTATGACCCAAATGCAAGACCCTCCACTCTTACGCCTTGAGAATGAGTCCTACCAAATATGCATCACATTTTTACAGAACCTTGTTGTAGACAGACCACCTAGCTATGATGAAGCTGAGGTTGAGACTCATCTAGTTCAGCTTTGTCAAGAGGTTTTGGGATTTTATATTGAAGTAGCAGGCTCTCGACAAGCATCTGAATCTTCTCATGGTAGGCAGCAACATTGGTTGATTCCCCTAGGCTCTGGAAAGCGAAGAGAGTTAGCTGCACGCGCACCACTCATTGTCGCCACTCTTCAGACTATTAGTAATTTGGGAGATGTTTCTTTTGAGAAGAATCTGGTGCACTTTTTCCCTCTTCTCTCAAGCTTGATAAGTTGTGAACATGGATCGACAGAGGTCCAGGTTGCTCTCAGTGATATGCTTAGTTTATCAGTTGGTCCACTTTTGCTAAGGTCATGTTGA 5364 0.426 MASSEADSRLSQVIVPALEKILKNASWRKHAKLAHECKSVTETLTSNQKLQSPASEAVASDNGEPEVSVPGPLHDGGSVEYSLAESESILSPLINAAGSGVLKIADPAVDAVQKLIALGYLRGEADAAGECPESKLLASLIESVCKCHDLGDEAMELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPVEKSDVDSSMTVFVQGFITKIMQDIDGVWNPSGTPSKVAALTHDGAFQTTATVETTNPADLLDSTDKDMLDAKYWEISMYKTALEDRKGELVDGEVVERDDDFEIQIGNKLRRDAFLVFRALCKLSMKTPPKEASADPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCLDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVSTTVLPPQEATLKLEAMKCLVAILKSMGDWMNKQMRIPDPHSSKKSEAVDNGHETGDFPMANGNGEEPVEGSDTHPELSNEGSDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLIKANKVGNSPEDIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRMFLQGFRLPGEAQKIDRIMEKFAERYCKCNQKVFSSADTAYVLAYSVILLNTDAHNPMVKNKMSPDDFIKNNRGIDDGKDLPEEYLRSLFERISRNEIKMKDVDLDHQQIQTVNPNRLLGLDSILNIVVRKRGDDNHMGTSDDLIRRMQEEFREKARKTESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEIVIALCLEGFRNAVHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKTIVTIADEDGNYLQEAWEHVLTCVSRFEHLHLLGEGAPPDATFFAFPQNDSDKVKQTKTTILPVLKKKGPGRMQYAAASLMRGSYDSAGIGSNAAGAITSEQVNSLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAITFLRFCATKLAEGELGSSSRNKGKETFGKISTASPRTGKEGRQDNGEVTVKDDHLYFWFPLLAGLSELSFDPRSEIRQSALQVLFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSSQVSEVETDGELDQDAWLYETCTLALQLVVDLFINFYSTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVMTLKDAANATLPSFTFLDGGDFVTGNEPASTAEDGRDLAESSSHDNLESPRTDRLYAYISDAKCRAAVQLLLIQAVTEIYNLYRTQLSAKAILVLFDTLHDVASHAHMINSNTILRTKLQEFGSMTQMQDPPLLRLENESYQICITFLQNLVVDRPPSYDEAEVETHLVQLCQEVLGFYIEVAGSRQASESSHGRQQHWLIPLGSGKRRELAARAPLIVATLQTISNLGDVSFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 564 578 - -
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 1543 1558 - -
Vifa5g01400 1787 Gene3D - 695 815 IPR023394 -
Vifa5g01400 1787 ProSiteProfiles SEC7 domain profile. 613 800 IPR000904 GO:0005085|GO:0032012
Vifa5g01400 1787 Pfam Domain of unknown function (DUF1981) 1171 1253 IPR015403 -
Vifa5g01400 1787 Gene3D - 613 694 - -
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 1310 1340 - -
Vifa5g01400 1787 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 220 IPR032629 -
Vifa5g01400 1787 Pfam BIG2 C-terminal domain 1578 1776 IPR046455 -
Vifa5g01400 1787 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 71 1652 - -
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 1315 1334 - -
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 44 74 - -
Vifa5g01400 1787 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 605 693 - -
Vifa5g01400 1787 SUPERFAMILY ARM repeat 384 1504 IPR016024 -
Vifa5g01400 1787 SUPERFAMILY Sec7 domain 617 808 IPR035999 GO:0005085|GO:0032012
Vifa5g01400 1787 Pfam C-terminal region of Mon2 protein 1352 1414 IPR032817 -
Vifa5g01400 1787 Pfam Sec7 domain 621 802 IPR000904 GO:0005085|GO:0032012
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 561 612 - -
Vifa5g01400 1787 SMART sec7_5 617 802 IPR000904 GO:0005085|GO:0032012
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 44 58 - -
Vifa5g01400 1787 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 695 813 - -
Vifa5g01400 1787 MobiDBLite consensus disorder prediction 1538 1558 - -
Vifa5g01400 1787 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 349 507 IPR032691 -
Vifa5g01400 1787 CDD Sec7 620 802 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01400 Vifa-Chr5 403586349 403598920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01400 K18442 - gmx:100789988 3106.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01400 5 403586349 403598920 Vifa5g01400 5 403586349 403598920 ECH
Vifa5g01400 5 403586349 403598920 Vifa4g00736 4 215732957 215750356 PCT