Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00736 ATGGCTTCCTCGGAAGTCGATTCCCGTCTGAGTCAGCTTGTCGTTCCTGCACTCGACAAGATCATTAAGAACGCTTCATGGCGAAAGCATGCGAAACTCGCTCACGAGTGCAAATCTGTCCTCGAGAGGCTCAGTCTCAACAACCACCAGTTACATCCCGATTCTTCCTCTGACACCGAACCGGAAACGCCCGGTCCACTTCACGACGGAGGTTCGATTGAGTACTCGCTCGCCGAATCGGAATCGATTCTCGTTCCTCTCATCAATGCCGCAGGTTCCGGATTCCTGAAGATCGCCGAACCTGCCGTCGACGCCATCCAGAAACTTATTGCTCATGGATACCTTCGCGGTGAAGCGGATCCTGGCGGTAGTGCTGGCGAGGCAAAGTTGCTTTCCAACATGATTGAATCGGTTTGCAAATGCCACGGTTTCGGTGATGAAGCGATGGAATTGCAGGTTCTGAAAACGCTCTTATCAGCGGTAACTTCGATTTCGCTACGAATTCACGGTGATTGTTTGCTTTTGATAGTTAGAACGTGTTATGATATATATCTTGTGAGTAAGAATATGGTGAATCAAACTACGGCAAAGGCGTCTTTGATTCAAATGTTAGTGATTGTGTTTAGGAGAATGGAAGCGGATTCTTCCACTGTTCCAGTTCAGCCAATTGTGGTGGCGGAATTGATGGCTCCTGCTGAAAAATCTGACGTGGATAATTCCATGACACAGTTTGTGCAAGGGTTTATTACAAAGATAATGCAGGATATTGATGGAGTTTTGAATCCTGTTACACCTAATAGTAAGATTTCTATGTTAGGTGGACATGATGGTGCGTTTGAGACCACCACAGTGGAGACTACAAACCCTACTGATTTGTTGGATTCTACTGATAAGGATATGTTGGATGCTAAGTATTGGGAGATTAGCATGTACAAGACGGCATTGGAGGGAAGGAAAGGGGAGTTGGTTGACGGGGAGTTGGTGGAAAGGGATGATGATTTGGAAGTTCAGATCGGGAACAAGTTGAGGAGGGATGCTTTTTTGGTGTTCAGAGCGCTTTGTAAATTGTCCATGAAGACACCCCCTAAGGAGGCATCTACGGATCCACAGTTGATGAGGGGGAAGATTGTGGCTTTAGAGTTATTGAAGATTTTGTTGGAGAATGCTGGAGCTGTCTTCCGGACTAGTGAAAGGTTTTTAGGTGCCATCAAGCAGTACTTATGTTTATCATTATTGAAGAACAGTGCTTCAACTCTTTTGATTGTTTTTCAGCTGTCATGCTCCATTTTCATCAGTCTGGTATCAAGATTTAGGCCTGGATTGAAAGCAGAAATTGGAGTTTTTTTCCCTATGATTGTTCTTAGAGTCCTAGAAAATGTTTCTCAACCTAATTTTCAGCAGAAGATGATAGTTCTTCGGTTTCTAGAAAAGCTTTGTGTTGATTCACAGATATTGGTTGACATTTTTATCAACTATGACTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTTAATGGACTTCTTAAAACTGCTCAAGGTGTTCCTCCTGGTGTTACAACCACACTTTTGCCACCTCAGGAAGTGGTACTAAAAATTGAAGCCATGAAAAGCTTGGTTGGTGTTCTAAAATCAATGGGAGACTGGATGAACAAACAATTGCGGATTCCAGATCCTCATTCAGCTAAGAAAGTTGAAGCAGCTGATAATGACTATGATGCTAGAGGTTTCGTGATGGCAAATGGAAGTGGAGTAGACCCAGGTGAAGGATCGGATTCTCATTCTGAAACCCCAAATGATGCATCTGATGTTTCAACTATTGAGCAACGCCGGGCTTATAAACTGGAACTTCAGGAAGGTATATCACTTTTTAATAGGAAGCCTACGAAAGGAATTGAGTTCCTTATCAATGCCAACAAGGTGGGTGATTCACCGGAAGATATAGCCACTTTTCTTAAAGATGCATCTGGGTTGGACAAAATTTTGATAGGTGATTATCTGGGTGAAAGAGAAGAGTTATCCTTGAAGGTAATGCACGCCTATGTAGATTCCTTTAACTTTCAAGGAATGGAGTTTGATGAGGCAATCCGGGTCTTTCTTCAAGGATTTAGACTACCTGGCGAGGCACAAAAGATTGACCGGATAATGGAAAAGTTTGCTGAGCATTATTGGAAATGTAATCCCAAGGCTTTTTCCAGTGCTGACACAGCATATGTCCTTGCCTATTCAGTGATAATGCTCAATACAGATGCTCACAATCCTATGGTGAAGGACAAGATGTCTGCTGATGACTTCATCAGAAACAATCGCGGCATTGATGATGGAAAAGATCTGCCTGAGGAATACTTGAAGTCCTTGTTTGATAGAATTTCTAGAAATGAAATCAAAATGAAAGAGGATGACATGGCTTCCCAACAAAGGCAGGCTGTGAACCCAAATAAACTTTTAGGCTTGGATAGTATATTGAATATTGTGGTACGTAAGCGTGGGGATGAGAGTCATATGGAAACCAGTGATGATCTTATCCGTCATATGCAAGAACAATTCAAAGAGAAAGCTCGCAAAACTGAGTCAGTTTATTATGCAGCGACAGATGCTGTAATCCTCAGATTCATGATAGAGGTGTGTTGGGCACCAATGTTAGCTGCTTTCAGTGTAGCTCTTGATCAAAGTGATGATGAGGTTGTAATATGTCTCTGTCTTAAAGGCTTCCGCCATGCTATTCATGTTACTTCTGTAATGTCTATGAAGACTCATAGAGACGCTTTTGTGACTTCATTAGCAAAGTTTACCTCTCTGCATTCTCCTGCAGATATTAAGCAGAAGAATGTATATGCAATTAAGGAAATAATTACTATTGCTGACGAGGATGGAAATTACTTGCAAGAAGCTTGGGAGCATATCTTGACATGTGTTTCCCGATTTGAGCATCTACATCTTCTTGGAGAGGGGGCTCCACCAGATGCAACCTTTTTTGCCTTTCCTCAGAATGATTTGGAAAAAACAAAGCAAGCTAAATCAACCATTCTTCCTGTTTTGAAAAAGAAGGGACTTGGAAGGATGCTGTATGCAGCTAGCACATTGATGCGGGGTTCATACGATAGTGCTGGAATTGGCAATAGTACTTCTGGAGCAGTCACTTCAGAACAGGTGAATAACCTGGTTTCAAATTTGAATATGTTGGAACAAGTTGGAAGCTCTGAAATGAATCGCATATTCACTCGGAGTCAGAAGTTAAACAGTGAGGCCATAATAGATTTTGTTAAGGCCCTATGCAAAGTCTCTATGGAGGAACTAAGATCTCAATCGGATCCACGTGTTTTCAGCCTTACGAAGATGGTTGAGATTGCGCACTATAATATGAACCGCATCCGGCTTGTGTGGTCAAGCATCTGGCATGTTCTCTCTAATTTTTTTGTAACCATTGGATGTTCTGCAAACCTTTCAATTGCAATTTTTGCAATGGATTCCTTGCGGCAGTTGTCAATGAAATTCCTGGAGCGGGAAGAGTTGGCTAATTATAATTTTCAAAATGAATTTATGAAGCCTTTTGTCATTGTTATGCGAAAGAGTAATGCTGTTGAAATTAGAGAACTAATTATCAGATGTGTATCTCAAATGGTTCTATCTCGTGTCAACAATGTCAAATCTGGGTGGAAGAGCATGTTCATGGTGTTCACTACAGCAGCTTATGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATCATTGAGAAGATTATTCGAGATTACTTTCCATACATTACTGAGACTGAAACCACCACCTTCACTGACTGTGTTAATTGTCTAATTGCATTCACCAATAGTAGATTCAACCAAGAGATTAGCCTAAATGCCATTGGTTTTCTTCGTTTCTGTGCAACAAAGCTAGCTGAAGGAGACCTTGGATCATCATCCAGGAATAAAGATAAGGAAGTTTCTGGAAAGATTTCCTCAACTTCACCTCTAGAAAGAAAATATGGGAATCAAGATAATGGAGAGGTGACCGACAAGGATGATCATCTCAATTTCTGGTTTCCTTTATTGTCAGGTCTATCGGAGCTTAGCTTTGACCCAAGGCCAGAAGTTAGGAAGAGTGCCCTAGATGTCCTGTTTGAAACATTACGCACCCATGGCCATCTCTTTTCACTACCTTTGTGGGAAAGAGTATTTGAGTCTGTCCTCTTTCCTATATTTGATTATGTTAGACATGCTATTGATCCTTCAGGGAGTAGTCCACAGGGCAATGAAATAGAGACTAACGGCGAGCTTGATCAAGATGGTTGGCTTTATGAGACATGCACAGTGGCACTCCAACTGGTTGTAGATCTTTTTGTCAACTTTTACAACACTGTCAATCCTCTTTTAAGAAAGGTCCTGATGCTCCTAGTAAGCTTCATAAAGCGCCTTCATCAAAGCCTTGCTGGCATAGGTATTGCTGCATTTGTTCGATTGGTGAGTAATGCTGGAGAGCTATTTTCTGATGACAAGTGGTTAGAAGTGGTTTTGTCGATAAAAGAAGCAGCAAATGCAACACTTCCTGAATTTTCATTGCTCGAAAGTGAAGGCTTTGTGGCTAGAAGTGAAGAACTTGCTTCAACAGTTGATGATGACAGAGATCATGTTGAGTCTGGGTCACCAGATGATTTAGAAAGCCTAAGAGTTCGTCGTCTATATGCTTATGCAACTGATGCGAAATGCCGAGCAGCTGTTCAGATTTTATTGATTCAGGCTGTGTTGGAGGTCTACAACATGTTTCGGTCTCACCTTTCAGCGAAAACCATTGTACTCCTCTTTGATGCTTTGCATGGTGTATCATTACATGCACACAACATCAACAACAATACTTTATTGCGTTCCAAGCTTCAAGAGTTTGGTTCTATGGCCCAAATGCAAGACCCTCCACTATTACGTCTTGAAAATGAGTCATACCAAATATGCCTTACATTTTTACAGAATCTTGTTATTGACAAGCCTCCTAGTTATGAAGAAGTAGAGGTGGAATCTCATCTTGTCCAGCTTTGTCAGGAGGTTTTGGAGTTTTATATTAAAGTTGCAGGTTGTGAAGAAAAATCAGAATCTTCACTTAGGAGAAAGCCACATTGGTCAATTCCTTTAGGCTCTGTGAAGCGGAGAGAATTAGCTGCACGTGCACCTCTTGTTGTGGCTACTCTGCAGGCTATTTGTAGCTTGGATGACATTTCTTTTGAGAAGAACCTGTCTCAATTTTTCCCTCTTCTCACTAGTTTGACAAGTAGCGAACATGGGTCAAATGAGGTCCAAGTTGCCCTTTGTGACATGCTTACTTTATCAGTTGGCCCTGTTTTGTTACGGTCATGTTGA 5349 0.4156 MASSEVDSRLSQLVVPALDKIIKNASWRKHAKLAHECKSVLERLSLNNHQLHPDSSSDTEPETPGPLHDGGSIEYSLAESESILVPLINAAGSGFLKIAEPAVDAIQKLIAHGYLRGEADPGGSAGEAKLLSNMIESVCKCHGFGDEAMELQVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLVSKNMVNQTTAKASLIQMLVIVFRRMEADSSTVPVQPIVVAELMAPAEKSDVDNSMTQFVQGFITKIMQDIDGVLNPVTPNSKISMLGGHDGAFETTTVETTNPTDLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGELVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEASTDPQLMRGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRPGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLEKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEVVLKIEAMKSLVGVLKSMGDWMNKQLRIPDPHSAKKVEAADNDYDARGFVMANGSGVDPGEGSDSHSETPNDASDVSTIEQRRAYKLELQEGISLFNRKPTKGIEFLINANKVGDSPEDIATFLKDASGLDKILIGDYLGEREELSLKVMHAYVDSFNFQGMEFDEAIRVFLQGFRLPGEAQKIDRIMEKFAEHYWKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKDKMSADDFIRNNRGIDDGKDLPEEYLKSLFDRISRNEIKMKEDDMASQQRQAVNPNKLLGLDSILNIVVRKRGDESHMETSDDLIRHMQEQFKEKARKTESVYYAATDAVILRFMIEVCWAPMLAAFSVALDQSDDEVVICLCLKGFRHAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVYAIKEIITIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDLEKTKQAKSTILPVLKKKGLGRMLYAASTLMRGSYDSAGIGNSTSGAVTSEQVNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSQSDPRVFSLTKMVEIAHYNMNRIRLVWSSIWHVLSNFFVTIGCSANLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNQEISLNAIGFLRFCATKLAEGDLGSSSRNKDKEVSGKISSTSPLERKYGNQDNGEVTDKDDHLNFWFPLLSGLSELSFDPRPEVRKSALDVLFETLRTHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSPQGNEIETNGELDQDGWLYETCTVALQLVVDLFVNFYNTVNPLLRKVLMLLVSFIKRLHQSLAGIGIAAFVRLVSNAGELFSDDKWLEVVLSIKEAANATLPEFSLLESEGFVARSEELASTVDDDRDHVESGSPDDLESLRVRRLYAYATDAKCRAAVQILLIQAVLEVYNMFRSHLSAKTIVLLFDALHGVSLHAHNINNNTLLRSKLQEFGSMAQMQDPPLLRLENESYQICLTFLQNLVIDKPPSYEEVEVESHLVQLCQEVLEFYIKVAGCEEKSESSLRRKPHWSIPLGSVKRRELAARAPLVVATLQAICSLDDISFEKNLSQFFPLLTSLTSSEHGSNEVQVALCDMLTLSVGPVLLRSC 1782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00736 1782 Gene3D - 689 809 IPR023394 -
Vifa4g00736 1782 SMART sec7_5 611 796 IPR000904 GO:0005085|GO:0032012
Vifa4g00736 1782 ProSiteProfiles SEC7 domain profile. 607 794 IPR000904 GO:0005085|GO:0032012
Vifa4g00736 1782 MobiDBLite consensus disorder prediction 580 606 - -
Vifa4g00736 1782 Pfam C-terminal region of Mon2 protein 1268 1407 IPR032817 -
Vifa4g00736 1782 MobiDBLite consensus disorder prediction 589 606 - -
Vifa4g00736 1782 CDD Sec7 614 796 IPR000904 GO:0005085|GO:0032012
Vifa4g00736 1782 MobiDBLite consensus disorder prediction 1303 1334 - -
Vifa4g00736 1782 Pfam BIG2 C-terminal domain 1573 1770 IPR046455 -
Vifa4g00736 1782 Pfam Domain of unknown function (DUF1981) 1165 1247 IPR015403 -
Vifa4g00736 1782 Pfam Dimerisation and cyclophilin-binding domain of Mon2 7 214 IPR032629 -
Vifa4g00736 1782 SUPERFAMILY Sec7 domain 611 802 IPR035999 GO:0005085|GO:0032012
Vifa4g00736 1782 Gene3D - 607 688 - -
Vifa4g00736 1782 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 689 807 - -
Vifa4g00736 1782 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 343 501 IPR032691 -
Vifa4g00736 1782 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 597 687 - -
Vifa4g00736 1782 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 58 1647 - -
Vifa4g00736 1782 MobiDBLite consensus disorder prediction 49 71 - -
Vifa4g00736 1782 SUPERFAMILY ARM repeat 1117 1771 IPR016024 -
Vifa4g00736 1782 Pfam Sec7 domain 615 796 IPR000904 GO:0005085|GO:0032012
Vifa4g00736 1782 SUPERFAMILY ARM repeat 402 1259 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00736 Vifa-Chr4 215732957 215750356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00736 K18442 - gmx:100778814 3039.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01400 5 403586349 403598920 Vifa4g00736 4 215732957 215750356 PCT