Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01309 ATGAGAATCAAGTTGAATTTGTTGTTGTGTGTTTTGGTTTTGTTTTTGGAGTGTTGTTTGGGTAGGTTTTTGGTGGAGAAGAATAGCTTAAGAATCACTACTCCAAAATCACTTAAAGGTTCATATGAATGTGCAATTGGGAATTTTGGGGTGCCTCAGTATGGTGGAACATTGATTGGTTCTGTGGTGTATCCAAATGTGAATCAGAAAGGATGCAGAAACTTCACTGATTACGATGCTTCGTTTCAGTCCAAGCCTGGAGTTTTCCCCACCTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCGCAAAATGGTGGAGCAGCGGCTATTCTTGTAGCGGATGACAAAGTAGAAACACTAATCACTATGGACACTCCTGACGAAGGGAATGTTGCAAACGATGATTATGTGGAAAAGATTAATATTCCTTCTACTCTTATCAGCAAATCCTTGGGGGACAGAATCAAGAAAGCTCTCTTGAATGGTGAGGTTGTTCACATAAATCTTGATTGGAGAGAGGCTCTTCCGCATCCGGACGACAGAGTTGAGTATGAGTTATGGACGAATAGCAATGACGAATGCGGTCCAAAGTGTGACAATCAAATTGATTTTGTGAAGAGCTTTAAAGACCCTGAGAATGATTTCAATAAAGGGTATGATGGCAAAGATGTTGTTCTTCAGAATTTACGACAAGCTTGCTTCTTTAAAGTGGCTAATGAAAGTGGAAGGCCTTGGCAATGGTGGGACTATGTGACCGATTTTTCAATCCGTTGCCCCATGAAAGAGAAAAAATACACAGAAGATTGTTCAGATCAAGTTATTAAATCTCTTGGTGTTGATCTTGAGAAGATAAACGCCTGTGTTGGGGATCCTGATGCTGATGTTGAAAATCGTGTTCTCAAAGCCGAACAGGATTTACAGATTGGCAAAGAGTCTCGGGGTGATATTACTATACTGCCTACTCTTGTTATAAACAACCGACAATATAGAGGTAAGTTGTCAAGACCAGCAGTTCTCAAGGCAATATGTTCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTTCAGACATGGAAACAAACGAGTGTTTGGAAAACAATGGTGGCTGTTGGCAAGATAAATCTTCTAACATTACTGCGTGCAGGGACACTTTTCGAGGAAGAGTTTGTGAATGCCCTATTGTAAATAATGTGAAGTTTGTTGGGGATGGTTATACCCACTGCGAAGCTTCAGGAGCCTTAAGCTGTGATTTCCACAATGGAGGTTGTTGGAAACAATCCCACGGTGGAAGGCTTTACTCGGCTTGCCATGATGACTATAAAAAAGGCTGCGACTGTCCGTCAGGTTTCAAAGGTGATGGAGTCTTGTCATGTGAAGATATTGATGAGTGCAAAGAAAAGTTGGCATGTCAGTGTCCACAATGCAAATGCGAAAACACCTTTGGGAGTTACGAGTGCAAATGCAATAGCGGTTTGCTCTACTCACGAGAGAATGACACATGTATTGGTAGATATACTTCTTCTTCAGTACCGAGTATATGGACGATTATCCTTGTCGCGGTTATTACTCTTTCGGGAGGATATGCGTTTTACAAGTACAGAATCCAGAGATACATGGACACTGAGATACGTGCAATTATGGCGCAATACATGCCCTTGGATAATCAACCTCTTATTATTCCTAATCAAGAAGCTCATGATGATATATAG 1737 0.4116 MRIKLNLLLCVLVLFLECCLGRFLVEKNSLRITTPKSLKGSYECAIGNFGVPQYGGTLIGSVVYPNVNQKGCRNFTDYDASFQSKPGVFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKVETLITMDTPDEGNVANDDYVEKINIPSTLISKSLGDRIKKALLNGEVVHINLDWREALPHPDDRVEYELWTNSNDECGPKCDNQIDFVKSFKDPENDFNKGYDGKDVVLQNLRQACFFKVANESGRPWQWWDYVTDFSIRCPMKEKKYTEDCSDQVIKSLGVDLEKINACVGDPDADVENRVLKAEQDLQIGKESRGDITILPTLVINNRQYRGKLSRPAVLKAICSGFQETTEPSICLTSDMETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVNNVKFVGDGYTHCEASGALSCDFHNGGCWKQSHGGRLYSACHDDYKKGCDCPSGFKGDGVLSCEDIDECKEKLACQCPQCKCENTFGSYECKCNSGLLYSRENDTCIGRYTSSSVPSIWTIILVAVITLSGGYAFYKYRIQRYMDTEIRAIMAQYMPLDNQPLIIPNQEAHDDI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01309 578 Gene3D Glutaredoxin 215 352 - -
Vifa5g01309 578 FunFam Vacuolar-sorting receptor 1 20 185 - -
Vifa5g01309 578 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 6 566 - -
Vifa5g01309 578 FunFam vacuolar-sorting receptor 1 362 418 - -
Vifa5g01309 578 CDD EGF_CA 469 500 - -
Vifa5g01309 578 Gene3D Laminin 414 511 - -
Vifa5g01309 578 Pfam PA domain 60 162 IPR003137 -
Vifa5g01309 578 SUPERFAMILY PA domain 55 166 IPR046450 -
Vifa5g01309 578 Gene3D - 21 185 - -
Vifa5g01309 578 SUPERFAMILY EGF/Laminin 465 511 - -
Vifa5g01309 578 ProSitePatterns Calcium-binding EGF-like domain signature. 469 495 IPR018097 GO:0005509
Vifa5g01309 578 Gene3D Laminin 362 408 - -
Vifa5g01309 578 SMART egfca_6 469 511 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01309 Vifa-Chr5 382647621 382651129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01309 3 575 Miscellaneous Gene Families AT3G52850 62.761 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01309 - - gmx:100807514 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01309 5 382647621 382651129 Vifa5g01309 5 382647621 382651129 ECH
Vifa5g01309 5 382647621 382651129 Vifa4g00020 4 2408845 2411974 PCT