Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00020 ATGAAAATGTTGACAAAGTTAAGTTTTTTATGGTGTCTTTGGATTTTTCTCTGTGGCTCTTGTTGTATGGGAAGATTTGTGGTAGAAAAAAACAATTTGAAAATCACTTCTCCAAAATCCTTGAGAGGTGTTTATGAATGTGCAATTGGGAATTTTGGGGTTCCAAAATATGGTGGAACCATGATTGGAACTGTTGTGTACCCTAAGTTTAATCAGAATGGATGCCACAGATTTAACGATGCTGATACTTCCTTGAGTTCCAAGCCTGGAAGCTTTCCTTCCTTTGTTCTAGTTGATCGCGGAGATTGTTACTTCACTTTAAAGGCATGGAATGCTCAGATGGGTGGAGCAGCAGCGATTCTTGTTGCAGATGATAGGGTAGAACCATTGATCACCATGGACACTCCTGAAGAAGCCAATGGTGGTAACGTGGATGATTATATTGAAAAGATTACAATTCCGTCGGCTCTTATCAGCAAATCACTTGGCGACAGTATCAAGAAGACTCTGTCAAGTGGAGGAATGGTGAACATGAATCTCGATTGGAGAGAAGCACTTCCACACCCCGATGAGAGAGTTGAATATGAGTTATGGACGAGTAGTAACGACGAGTGTGGTCCAAAGTGTGAGAGTGAACTTAACTTTTTCAAGAGTTTCAAAGGCGCGGCTCAATTACTTGAGCAAAAAGGGTACACTCGGTTTACGCCTCACTATATAACTTGGTATTGTCCAGAAGCATTCATCTTAAGCCAACAGTGTAAAGCTCAGTGCATTAACAATGGGAGGTACTGCGCACCTGATCCCGAGCAAGATTTCAGTAGAGGCTATGATGGAAAAGATGTCGTTGTTCAAAATTTGCGCCAAGCTTGTTTCTTTAAAGTTGCAAATCATAGTGGTAAGCCTTGGCAATGGTGGGACTATGTTACCGACTTTGCTATCCGATGTCCAATGAGACCACATAGATACACCGAAGAATGTTCCGATCAAGTTGTTCAATCGCTTGGTGTTGATTTGAATAAGATTAAAGAATGCATGGGGGACCGCAACGCAGATGTTGAAAATCCTATCCTTAAGGCTGAACAGGATGCACAGATTGGACACGGTACTCGTGGCGATGTAACAATACTACCCACTCTTGTTATAAACAACAGACAATATAGAGGCATGCTGTCTAAAGCAGCGGTACTAAAAGCAATCTGTGCAAGTTTCCAAGAGACTACTGAGCCATCAATTTGTTTAACTCCAGACATGGAGACAAATGAGTGTTTGGTCAACAATGGTGGTTGTTGGCAAGACAAATCTGCCAACATTACAGCATGCAGGGACACTTTCCGAGGAAGAATATGCGAATGCCCTATTGTACAAAACGTAAAGTTTGTCGGTGATGGATATACTCATTGCGAAGCTAGTGGACCTTTGAGGTGTGCAGTCAACAACGGAGGTTGTTGGCAGGGAGCCCAAGGCGGTCGGGCTTACTCTGCTTGTATCGACGATCATACCAAAGGTTGCAAGTGCCCAACTGGATTCAGGGGCGACGGAGTACACTCATGTGAAGATGTGGATGAGTGCAAAGAGAAATTAGCATGCCAGTGCCCAGAGTGCAGCTGCAAAAACACTTGGGGGAGTTATGAATGCTCATGTAGTAATGGTTTGTTCTATATGCGAGAAAGTGACATGTGTATTGGAAAATATAGCGCTTCGGTGTCGAACGTGGGATTCGTTTGGATGCTTATACTCATATTAGGTATTGGTGGAGCTGGCGGATATGCATTCTACAAGTACAGAATCCAGAGATATATGGATTATGAGATAAGAGCAATAATGGCGCAATATATGCCGTTGGATAATCAACCGGAGAACTTAAATCAAGTTCAGCATGCCGTGTAG 1887 0.4287 MKMLTKLSFLWCLWIFLCGSCCMGRFVVEKNNLKITSPKSLRGVYECAIGNFGVPKYGGTMIGTVVYPKFNQNGCHRFNDADTSLSSKPGSFPSFVLVDRGDCYFTLKAWNAQMGGAAAILVADDRVEPLITMDTPEEANGGNVDDYIEKITIPSALISKSLGDSIKKTLSSGGMVNMNLDWREALPHPDERVEYELWTSSNDECGPKCESELNFFKSFKGAAQLLEQKGYTRFTPHYITWYCPEAFILSQQCKAQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANHSGKPWQWWDYVTDFAIRCPMRPHRYTEECSDQVVQSLGVDLNKIKECMGDRNADVENPILKAEQDAQIGHGTRGDVTILPTLVINNRQYRGMLSKAAVLKAICASFQETTEPSICLTPDMETNECLVNNGGCWQDKSANITACRDTFRGRICECPIVQNVKFVGDGYTHCEASGPLRCAVNNGGCWQGAQGGRAYSACIDDHTKGCKCPTGFRGDGVHSCEDVDECKEKLACQCPECSCKNTWGSYECSCSNGLFYMRESDMCIGKYSASVSNVGFVWMLILILGIGGAGGYAFYKYRIQRYMDYEIRAIMAQYMPLDNQPENLNQVQHAV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00020 628 CDD EGF_CA 519 550 - -
Vifa4g00020 628 Gene3D Laminin 413 458 - -
Vifa4g00020 628 Gene3D - 23 189 - -
Vifa4g00020 628 Gene3D Laminin 474 561 - -
Vifa4g00020 628 Pfam PA domain 63 166 IPR003137 -
Vifa4g00020 628 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 9 619 - -
Vifa4g00020 628 FunFam vacuolar-sorting receptor 1 412 468 - -
Vifa4g00020 628 SMART egfca_6 519 561 IPR001881 GO:0005509
Vifa4g00020 628 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Vifa4g00020 628 FunFam Vacuolar-sorting receptor 1 23 189 - -
Vifa4g00020 628 SUPERFAMILY PA domain 95 176 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00020 Vifa-Chr4 2408845 2411974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00020 10 620 Miscellaneous Gene Families AT3G52850 70.962 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00020 - - gmx:100815266 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01309 5 382647621 382651129 Vifa4g00020 4 2408845 2411974 PCT