Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01282 ATGGAAACCAAGTTCATCAAAACGACGTCGTATCAAACCGAACCGGGTTCATCAAAGAATGCTGGTTTGATTGACACTTCGGTTCCATTTGAATCGGTTAAGGAAGCTGTTCATCGCTTCGGTGGTGTTGGTTACTGGAAACCCTTTCACACTTCTCATCCTTCTAAGCAGCATTGCATAGAAGAGTTTGATACGGAGAAACTGGAGGAGCAGGCAAGAGTATTGGAGAAAGAATTGAGCCTGAAAGAAAGGGAAACTCTTGATGTATTGAAAGAATTGGATAAGACGAGAAGGCTTGTTGAAGACTTGAAATCAAAGCTGCAGAAGGAAGAATCTGAAGCAAAATTGAATCCTGAGATCAGCGTGTGTGATAAAAAATCGGATGTAAAGGAGAATCAATTGAGTCCGTCTGAGGCTGTTTGTCCTATGAAGGAATGTTCGAAGCCTTCTCATGTATCTTCTCCGGGTTTAATACTAATGGAGTTGAAGCAGGCAAAGTTGAATCTAACCAAAACCACTCATGATTTTGCCGATGTACGAGCTACTGTTGATTCTCTTAATAAGAAATTAGAGAAAGAAAGGATCTCACTTGAGAAAACCCGCGAGAGGTTAACTCAGAATTATTCGAAAATATCTTCTCTAGAAGATGAGCTAAACCAAATCAGATTAAGACTTGAAGTTGCAAAAGGCGATGCTTCTGATAATCCTTTAGATGTTACAGTAGAGCTCCATAAATTGCGTTCAGAGGCCGAGCATTTCAGAAAAAGGAGAGAATCTGCACAATCAGAAGTTTTGAAAACAATGTCTGAGATTGAGCTGACAAAAGCTATGATAAGAACTGCCAAAAGCAGGTTGGTTGCGGCAAAGAAAATAAAGAAAGCTTCAAGAGCTGCAGAAGCTGCTACCCTTACCGAAATTAACGCATTGTCTAACCACAGGGGTTCGCCAAGAGAGTGTACGCCAAAGCGCAAGGAAATTACGCTTTCAATTGATGAGTATATTACTCTGACCCGAAAAGCTCGAAACGCCGAGGAACAATCTAAGAAGAGAGTAGCAAATGCTAAGCTTGAAGTTGATGAAGCATATTCATCGCGTAGGGATATTTTGAAAAGGGTAGACGAAGCAACAAAAGAAGCTATAACCGGCAAGAAGGCCCTTGAAGAAGCCCTAGAAAGAGTAATGGCTGCAGATAGAGGGAAGCTAGAAGTTGAAGAGGCTTTAAGAAAGTGGCGATCCGACAGTCACAAAAGGCGTTCTTCGACGAATAATAACTCTACCAAGTTCAAAAACCCCGGTCCATCAGATCAAAGGAGAGATTTCACGTTACTGGATGTAAACGGAATGAATTTGGTAAATGATGAAGTCAAGCCTGTCTTAAAGCCAACTCTATCAATAGGACAAATACTAAGCAGGAAATTGTTTAGACCAGAAGAGTTTGAAGGGCACGGCGAAAAAGCCTCGGTAAAACGGAAGGTGTCATTAGGTCAGATGCTTGGCAAACACAATGATGTTGAGGATGCATTGTTTGATGAGCAAGTCGAAAAAGAAAATGATCAGAAGCAGTTTTCTGCTAAGAGAAAGAAATTCGGGTTTGCAAGATTCTCACTTCTTTTGACAAAACAGCATAAGAAGAAGAAACCAATGCGGAATTCGAGGTGA 1659 0.4105 METKFIKTTSYQTEPGSSKNAGLIDTSVPFESVKEAVHRFGGVGYWKPFHTSHPSKQHCIEEFDTEKLEEQARVLEKELSLKERETLDVLKELDKTRRLVEDLKSKLQKEESEAKLNPEISVCDKKSDVKENQLSPSEAVCPMKECSKPSHVSSPGLILMELKQAKLNLTKTTHDFADVRATVDSLNKKLEKERISLEKTRERLTQNYSKISSLEDELNQIRLRLEVAKGDASDNPLDVTVELHKLRSEAEHFRKRRESAQSEVLKTMSEIELTKAMIRTAKSRLVAAKKIKKASRAAEAATLTEINALSNHRGSPRECTPKRKEITLSIDEYITLTRKARNAEEQSKKRVANAKLEVDEAYSSRRDILKRVDEATKEAITGKKALEEALERVMAADRGKLEVEEALRKWRSDSHKRRSSTNNNSTKFKNPGPSDQRRDFTLLDVNGMNLVNDEVKPVLKPTLSIGQILSRKLFRPEEFEGHGEKASVKRKVSLGQMLGKHNDVEDALFDEQVEKENDQKQFSAKRKKFGFARFSLLLTKQHKKKKPMRNSR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01282 552 Coils Coil 90 113 - -
Vifa5g01282 552 Coils Coil 65 85 - -
Vifa5g01282 552 Coils Coil 183 231 - -
Vifa5g01282 552 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 22 114 - -
Vifa5g01282 552 MobiDBLite consensus disorder prediction 410 438 - -
Vifa5g01282 552 Gene3D - 158 333 - -
Vifa5g01282 552 Pfam Weak chloroplast movement under blue light 160 417 IPR008545 -
Vifa5g01282 552 Pfam Weak chloroplast movement under blue light 22 115 IPR008545 -
Vifa5g01282 552 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01282 Vifa-Chr5 371419658 371422032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01282 - - gmx:100783770 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01282 5 371419658 371422032 Vifa5g01282 5 371419658 371422032 ECH
Vifa5g01282 5 371419658 371422032 Vifa2g05012 2 1488086037 1488088052 PCT