Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01046 ATGGCTGAAACAAAGTTGAGCAGCGTGAAGGATAAAAGATGGTCACTAGAGGGAATGACTGCGTTAGTGACAGGAGGAACCCGAGGCATTGGGTACGCAATTGTGGAAGAGCTGGCAGAATTTGGAGCAGCCGTGCATATATGTTCACGAAATGAAGATGACATTAACAAATGTCTGGAAGAATGGAAAAGCAAAGGGTTTAATGTAACAGGATCAGGATGTGATATATTAAGTCATGAACAACGCAAGACATTAATTGAAAATGTTTCTTCTATCTTTCACGGAAAGCTTAATATTCTAGTCAACAATGCTGCAAAACCTTCAATGAAGAAAATAATAGATAATAGTGATGAGGATATAACAAGTATAGTTGGCACAAATTTTGTGGCTGGTTACCATTTGTGTCAACTTGCACACCCACTTTTAAAAGAGTCTGGATATGGAAGCATAGTTTTTACTTCGTCCATTGCCGGTTTAAAAGCTATTCCTATTTTATCAGTATATGCAGCTACTAAAGGTGCGGTGAATCAATTCACGAAAAACTTGGCATTAGAGTGGGCAAAGGATAATATTCGTGCAAATGCGGTTGCCCCTGGACCTGTCAAGACTGAACTTTTGGGATCAGTAATGGATACTTCTGAAGGTGGTGGAGCTATAAATGGTATAGTTTCTCAAACTCCTATGGATCGTATGGGAGAGACCAGAGAGATATCATCATTAGTTGCTTTCCTTTGTCTTCCAGCTGCATCATACATTACTGGACAAGTTATTGCTGTTGATGGAGGTTACACAGCTTAG 798 0.396 MAETKLSSVKDKRWSLEGMTALVTGGTRGIGYAIVEELAEFGAAVHICSRNEDDINKCLEEWKSKGFNVTGSGCDILSHEQRKTLIENVSSIFHGKLNILVNNAAKPSMKKIIDNSDEDITSIVGTNFVAGYHLCQLAHPLLKESGYGSIVFTSSIAGLKAIPILSVYAATKGAVNQFTKNLALEWAKDNIRANAVAPGPVKTELLGSVMDTSEGGGAINGIVSQTPMDRMGETREISSLVAFLCLPAASYITGQVIAVDGGYTA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01046 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 265 IPR036291 -
Vifa5g01046 265 Gene3D - 2 265 - -
Vifa5g01046 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vifa5g01046 265 FunFam Short-chain dehydrogenase reductase 5 265 - -
Vifa5g01046 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vifa5g01046 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vifa5g01046 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vifa5g01046 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Vifa5g01046 265 PANTHER TROPINONE REDUCTASE 12 264 IPR045000 GO:0016491
Vifa5g01046 265 Pfam Enoyl-(Acyl carrier protein) reductase 27 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01046 Vifa-Chr5 307365659 307367532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01046 11 264 Miscellaneous Gene Families AT2G29290 54.724 6.98e-97 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01046 K08081 - tpra:123892393 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01046 5 307365659 307367532 Vifa5g01046 5 307365659 307367532 ECH
Vifa2g01590 2 425239818 425241367 Vifa5g01046 5 307365659 307367532 ECH