Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01590 ATGGCAGCAGCTGAAGAGTGCAGTTCCAATGGATCCTCACGGTGGTCCCTCAAAGGAATGACTGCTCTCGTCACCGGTGGAACTCGTGGAATCGGACATGCCATAGTGGAAGATTTGTGTGGGTTTGGTGCCACCGTCCACACTTGTTCCAGAAACCAAGCAGAGCTCGATAACTGTTTGAACCTATGGCGTAGTAAAGGCTTTTTGGTTTCTGGATCTGTGTGTGATGTGTCATCTCGAGACCAAAGGGAGAAGCTTATTCAACAAGTCACCTCAATCTTCAATGGCAAACTTCACATTTATGTGAACAATGTTGGGGCAAACTTTAGGAAACCAACCATTGAGTACACTGCTGAAGCATCTGGAGCGGGAAGCATTGTATTCATTTCATCTATTTCCGGTGTGGTAAGCTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCAATCAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCCAAAGATGGCATAAGGAGCAATTGTGTTGTTCCTGCTACCACTAATACACCACTTGTAGAACATCTGCTTCGCAACAAGCAATACGTAGACGAAATGTTGTCTCGAACTCCTCTTGGACGCATCGCAGAAGCTCAAGAAGTTTCATCCTTGGTCGCTTTCCTTTGTCTTCCGGCTGCATCTTACATCACAGGGCAGGTTATTTGTGTTGATGGAGGACTAACAGTGAATGGATTTCAGCCCAGTATGAGAATAACATAA 747 0.4511 MAAAEECSSNGSSRWSLKGMTALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQAELDNCLNLWRSKGFLVSGSVCDVSSRDQREKLIQQVTSIFNGKLHIYVNNVGANFRKPTIEYTAEASGAGSIVFISSISGVVSLGTGSVYAASKAAINQLTKNLACEWAKDGIRSNCVVPATTNTPLVEHLLRNKQYVDEMLSRTPLGRIAEAQEVSSLVAFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01590 248 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vifa2g01590 248 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 IPR002347 -
Vifa2g01590 248 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 131 159 IPR020904 GO:0016491
Vifa2g01590 248 Pfam short chain dehydrogenase 21 119 IPR002347 -
Vifa2g01590 248 Gene3D - 2 120 - -
Vifa2g01590 248 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vifa2g01590 248 PRINTS Glucose/ribitol dehydrogenase family signature 200 220 IPR002347 -
Vifa2g01590 248 PRINTS Glucose/ribitol dehydrogenase family signature 118 134 IPR002347 -
Vifa2g01590 248 PRINTS Glucose/ribitol dehydrogenase family signature 144 163 IPR002347 -
Vifa2g01590 248 PRINTS Glucose/ribitol dehydrogenase family signature 165 182 IPR002347 -
Vifa2g01590 248 PANTHER TROPINONE REDUCTASE 120 240 IPR045000 GO:0016491
Vifa2g01590 248 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 239 IPR036291 -
Vifa2g01590 248 Gene3D - 121 247 - -
Vifa2g01590 248 Pfam Enoyl-(Acyl carrier protein) reductase 122 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01590 Vifa-Chr2 425239818 425241367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01590 14 243 Miscellaneous Gene Families AT2G29290 57.198 5.85e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01590 K08081 - gmx:100775806 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01590 2 425239818 425241367 Vifa2g01590 2 425239818 425241367 ECH
Vifa2g01590 2 425239818 425241367 Vifa5g01046 5 307365659 307367532 ECH