Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00871 ATGTCAACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGAAGCTGAAAATGATGTTCCTTATACAGTGTATTTTGACAAAGCTCGGAAAACTCGACCTGGCACTAAAATGATCAATCCGAATGACCCTGAGGAAAATTCAGATTTAGATCTTCAAAATTCATCTTCTGCTGAGGTAATTCCTCCAAAACCAAGAGTTCACTCAGAGAATATATCTGAAAAAGGATCAGTGAGACCAGCACATAATGAGTTACAAAAGAACAAGGAGGACGGTGATCTTAAGCAATCTGTTAACTCGCCGGCTCGCCAAGAAAACTCAAACAGGAGTGCCGGCGATTCCGTCCACCGTCCTGGAGTTGGTTCTGCTGATAACCGCAGAAGACCTTCAAGACAAAGTACTGCTGGCTCGGAGTATAGTGTCGAACGTTCACCTCTTCATCGCCAGGCTAAAACCCCTGGCAGAGATAGTCCTTCTTGGGAAGGAAAGAACTCGTACGAGAACAGTCACGGTACACCAGGAAGATCTCGACTGAGATCAGTCAATCAAGAGGATGAAACTCCTGATAAAAGTGCTACTGTTCCAAAGTTTGGTGAGTGGGATGAGAATGACCCTGCATCAGCTGATGGCTATACTCACATTTTCGACAAAGTGCGCAAGGAGAAACAAGACACAGCTGGAAATGCACCAGGCACACCCAACGGGAGATCGTATGTTATCCGAAACCAACCCGCAAATGACAAAGCTCAGGGTTGCTGCTTTTTCTGGAGCAGAAAATGA 780 0.4526 MSTQRSHVPKFGNWEAENDVPYTVYFDKARKTRPGTKMINPNDPEENSDLDLQNSSSAEVIPPKPRVHSENISEKGSVRPAHNELQKNKEDGDLKQSVNSPARQENSNRSAGDSVHRPGVGSADNRRRPSRQSTAGSEYSVERSPLHRQAKTPGRDSPSWEGKNSYENSHGTPGRSRLRSVNQEDETPDKSATVPKFGEWDENDPASADGYTHIFDKVRKEKQDTAGNAPGTPNGRSYVIRNQPANDKAQGCCFFWSRK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00871 259 MobiDBLite consensus disorder prediction 97 113 - -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 126 140 - -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 158 178 - -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 41 60 - -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 68 96 - -
Vifa5g00871 259 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 7 241 IPR040387 -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 179 197 - -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 227 243 - -
Vifa5g00871 259 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 188 223 IPR008700 -
Vifa5g00871 259 MobiDBLite consensus disorder prediction 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00871 Vifa-Chr5 255970058 255972534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00871 K13456 - gmx:100499220 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00871 5 255970058 255972534 Vifa4g01483 4 437005844 437008590 PCT