Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01483 ATGGCACAACGTAATCATGTACCAAAATTTGGCAATTGGGAGGGTAGTGACAATGTTCCTTATACGGCATATTTTGACAAAGCTCGGAAAGGTCGAACTGGCTCAAAGATGATAAACCCAAATGACCCCGAGGAAAATCCTGATTTAGTTTTTGATAATTCATCATCTGAACAACCACCTCCGTCCAAATCCAAACCTAGGGTCGAATCAGAGGATCTATACGGAAAGGGATCAGCGCGAGCAACAATTGAGACACGTAAGAGTCTTGAAGATGGTGATCCTAAGCAATATGCTGACTCTCCAGCTCGTCATGACAATGTAGGCAATCGGAGTTCCAATGACTCTACACCTCGTCTTGGAGTAGGTTCTGCTGATAACCGCCGAAGACCTTCAAGACAAAGTACTGCTGGGTCTGAGTACAGCGTTGAACGATCACCCCTTCATCGTCAGGCTAGAGCTCCGGGAAAAGACAACCCCTCGTTGGAAACAAAGAATTCTTACGACAACAGCCATGGTACACCAGGGAGATCTCGGCTAAGACCAGTTAATCGAGGGGACGAAACTCCTGAGAAAGGCGCGGCTGTTCCAAAATTCGGTGAGTGGGATGTGGGTAACCCTGCATCAGCTGAGCGCTATACTCAAGTTTTCAACAAGGTGAGGGCAGAGAGACAGGGTGGGCCCGGACATGCACCCGGCACACCTAATGAGAGGCCACATGTTATCCGCAACCAACCTTCCAATGGAAAAGTCCAGTGTTGCTGCTTTGCTTGGGGAAGAAAATGA 783 0.4815 MAQRNHVPKFGNWEGSDNVPYTAYFDKARKGRTGSKMINPNDPEENPDLVFDNSSSEQPPPSKSKPRVESEDLYGKGSARATIETRKSLEDGDPKQYADSPARHDNVGNRSSNDSTPRLGVGSADNRRRPSRQSTAGSEYSVERSPLHRQARAPGKDNPSLETKNSYDNSHGTPGRSRLRPVNRGDETPEKGAAVPKFGEWDVGNPASAERYTQVFNKVRAERQGGPGHAPGTPNERPHVIRNQPSNGKVQCCCFAWGRK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01483 260 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 253 IPR040387 -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 105 120 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 127 141 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 48 63 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 159 173 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 30 206 - -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 222 246 - -
Vifa4g01483 260 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 189 224 IPR008700 -
Vifa4g01483 260 MobiDBLite consensus disorder prediction 83 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01483 Vifa-Chr4 437005844 437008590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01483 K13456 - gmx:100499218 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00871 5 255970058 255972534 Vifa4g01483 4 437005844 437008590 PCT