Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00282 ATGGCATCACTTGGTGCTGCCAAATTCCTCCTATGCTTCTCAATAATATGCCTCATCAACTTCCTACCTCTATGCCAAGGTAAAGAGAAGTGGAAAAATAGTAATGAATATAAGTATCGATTTATAAGAAAAGCAAGTTCATTTGAATCTCCACCTTCGGTTTCAACGAGCAACACAAATAATGGGTATGACTACATAATAGTAGGTGGTGGAACAGCAGGGTGTCCTTTAGCTGCAACACTTTCAAAGAAATTCAATGTTTTGTTACTTGAAAGAGGGGGCGTCCCTTTCACAAATCCTAATGTCTCATTTCTTGACAACTTTCATATTACATTGGCTGATACTTCACCAACCTCAGCTTCACAATTCTTCATGTCAACTGATGGAGTTTTCAATGCAAGAGCTAGGGTTTTGGGTGGTGGTAGCTCCATTAATGCTGGCTTCTACACTAGAGCAAGCTCAAGATTCATAGAGAAAATGGGGTGGGATGGAAAGCTAGTAAACGAGTCATATCCTTGGATTGAAAAGCAGATTGTTCATCGTCCAACATTTTCACATTGGCAAAGAGCATTAAGAGATGGTCTTCTAGATGCTGGTGTGTCACCTTTTAATGGATTCACCTATGAACATAAATATGGAACCAAAGTTGGTGGAACCATTTTCGACAGATTCGGTCGACGCCACACTGCTGCTGAATTGCTTTCTTCTGGAAATCCTAACAAACTCACTGTTTTGATCTATGCTACTGTCCAAAACATTGTTTTTGATACTACAGGAAAAAGGCCTAGAGCTATTGGAGTAAATTTCAAGGATGAAAATGGGAAAATGCATAAGGCAATACTAGGAAATGATATGCGAAGTGATGTGATTGTAACGAGCGGTGCGATTGGGACACCTCAAATGCTATTGCTTAGTGGAATTGGTCCGAGACAAGAACTCGAGAAGTTGAAGATTTCTGTGGTGCTTGATAACAGATTTGTCGGGAAGGGTATGGCTGATAACCCGATGAACACGATATTTGTTCCTCTTAAGAAACCGGTTAAGCAGTCGTTGATAGAAACAGTTGGTATTACTGATAAGGGTGTGTATATTGAAGCTAGCTGTGGGTTTGGACAGACCAATGAAAGCATTCATTGTCATCATGGTTTGTTGTCTGCTGAGATTGGCCAGCTTTCAACGATTCCACCAAAGCAGAGAACGACCGAAGCGGTTAAAGCTTTTGCGAAGAACAAAAGAGACATTCCAATTGAAGCATTCAAAGGAGGCTTTATCTTATCAAAAGTTGCCAATCCATGGTCAACAGGTGAACTCAGATTGATCAACACAAATGTGGAAGACAACCCTTCTGTTTCCTTCAACTACTTTAGTCATCCTTACGATCTTAATCGCTGCGTCGAAGGAATCCGATTAGCCTCAAAAGTTGTTCAGTCAAAGCACTTCACAAACCTCACTTTGTGTGACAGACAAACTACAGAACAGTTTCTTAACAACACTGTGAAGGCTAATGTTAACCTTATACCAAAGCATGTCAATGACACAGAATCACTTGAACAGTTTTGTAGAGACACTGTGATCACTATTTGGCATTACCATGGTGGATGCCATGTTGGGAAGGTTATCGACTCAGATCATAAGGTTCTCGGTGTTAACAGGCTCCGTGTCGTAGATGGCTCGACGTTTACCGAGTCGCCAGGAACCAATCCTCAAGCTACTGTCATGATGATGGGCAGGTACATGGGAGTGAAGATGTTAAGAGAAAGGTTGGGGAAATTTGCTGGTGTTTAA 1785 0.4118 MASLGAAKFLLCFSIICLINFLPLCQGKEKWKNSNEYKYRFIRKASSFESPPSVSTSNTNNGYDYIIVGGGTAGCPLAATLSKKFNVLLLERGGVPFTNPNVSFLDNFHITLADTSPTSASQFFMSTDGVFNARARVLGGGSSINAGFYTRASSRFIEKMGWDGKLVNESYPWIEKQIVHRPTFSHWQRALRDGLLDAGVSPFNGFTYEHKYGTKVGGTIFDRFGRRHTAAELLSSGNPNKLTVLIYATVQNIVFDTTGKRPRAIGVNFKDENGKMHKAILGNDMRSDVIVTSGAIGTPQMLLLSGIGPRQELEKLKISVVLDNRFVGKGMADNPMNTIFVPLKKPVKQSLIETVGITDKGVYIEASCGFGQTNESIHCHHGLLSAEIGQLSTIPPKQRTTEAVKAFAKNKRDIPIEAFKGGFILSKVANPWSTGELRLINTNVEDNPSVSFNYFSHPYDLNRCVEGIRLASKVVQSKHFTNLTLCDRQTTEQFLNNTVKANVNLIPKHVNDTESLEQFCRDTVITIWHYHGGCHVGKVIDSDHKVLGVNRLRVVDGSTFTESPGTNPQATVMMMGRYMGVKMLRERLGKFAGV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00282 594 PIRSF Alcohol_oxidase 40 592 IPR012132 GO:0050660
Vifa5g00282 594 ProSitePatterns GMC oxidoreductases signature 1. 135 158 IPR000172 GO:0016614|GO:0050660
Vifa5g00282 594 Pfam GMC oxidoreductase 63 335 IPR000172 GO:0016614|GO:0050660
Vifa5g00282 594 SUPERFAMILY FAD-linked reductases, C-terminal domain 331 533 - -
Vifa5g00282 594 PANTHER OSJNBA0019K04.7 PROTEIN 21 588 - -
Vifa5g00282 594 SUPERFAMILY FAD/NAD(P)-binding domain 55 584 IPR036188 -
Vifa5g00282 594 Gene3D - 63 576 IPR036188 -
Vifa5g00282 594 ProSitePatterns GMC oxidoreductases signature 2. 294 308 IPR000172 GO:0016614|GO:0050660
Vifa5g00282 594 Pfam GMC oxidoreductase 431 577 IPR007867 GO:0016614
Vifa5g00282 594 Gene3D - 180 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00282 Vifa-Chr5 41376838 41379836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00282 39 589 Miscellaneous Gene Families AT3G56060 49.009 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00282 K15403 - gmx:100818122 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00282 5 41376838 41379836 Vifa5g00282 5 41376838 41379836 ECH
Vifa5g00282 5 41376838 41379836 Vifa4g01359 4 406117448 406121427 PCT