Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01359 ATGGCTTCAATTGATACAGTTAAATTCTCACTGTTCTTTGTTCTATTGTTCTGGAACTGCAACTTTCTACCTCTCTCTCAAGGTAAAGAAGATCACCCTTATATAAAAAAAGCGAGTTCATTTTCATCACCATCAATTTCAGATACATCATTGAACAAAGCTTATGATTATATAATAGTTGGAGGTGGAGGTGCAGGGTGTCCTTTAGCAGCAACACTTTCACAAAATTTCAATCTTTCATCAAATTCAGCTTCACAATACTTTGTTTCAACTGATGGAGTTTTTAATGCAAGAGGAAGAGTTTTAGGTGGTGGCACTTCTATTAATGCCGGTTTCTATACTAGAGCTAGCCCAAGGTTTATAAGTAAGGTAGGGTGGGATGCAAAGCTAGTAAATGAGTCATACCCTTGGGTTGAGAAGCAAATTGTTCATCGTCCGAAGTTTTCGCCTTTTCAAAGAGCAGTGAGGGACAGCCTTATAGACACTGGAATCTCTCCTTTCAATGGCTTCACTTATGATCATATTTATGGAACAAAAGTTGGTGGAACCATTTTCGACAGATTTGGTCGTCGTCACACATCTGCTGAACTTCTTGCTTCCGGAAACCCTGACAAACTTACAGTTTTGGTTCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGTAAAAGACCAAAAGCTGTAGGGGTTATTTTCAATGATGAAAATGGGAAACAACATGAAGCAATGTTAGGAAATAATATACAAAGTGAAGTGATATTGTCTAGTGGAGCAATTGGTTCTCCTCAAATGTTATTGCTGAGTGGAATTGGGCCTAAAGCTGATCTCCAAAACTTGAACATCTCAGTGGTTCTTAACAACCGTTTCGTTGGAAAGGGAATGATAGATAATCCGATGAATGCACTTTATGTTCCTTCGAATCGGCCACTTCATCAGTCACTCATTCAAACTGTAGGTATCACCAAGAAAGGTATATACATCGAGGCTAGCAGTGGGTTTAGTCAGTCCAACACCAGCATTCACTGTCATCACGGTATCATGTCCGCTGAGATTGGACAACTTTCCACAATTCCTCCGAAGCAAAGATCAATAGAAGCTATTCAAGCTTACGTGAAGAACAAGCGAGACATACCAGTCGAAGCATTCAAGGGAGGTTTTGTCTTGTCAAAAGTCGGCAGTGCTTGGTCAGTAGGCGAGCTCAAGTTGATCAACACCAACGTGAATGAAAATCCTTCTATTACCTTCAACTACTTCAGTCATCCACTCGATCTGAAACGCTGCGTTGACGGGATCAGAATGGCACTTAAAGTAGTCCAGTCGGAACACTTCACAAACTACACATTGTGTAAGAAAAAAACCGCAGAGAAACTTCTTAATCTTAGTGTGAAGGCTAATGTCAACTTCATACCGAAAAATGCCAATGACACAACATCCCTAGAGCAGTTCTGCAAAGACACTATAATCACGATTTGGCATTATCATGGTGGATGTCATGTGGGGAAGGTAGTTAGTCCTGATTATAAGGTTCTTGATGTTGATAGACTCCGAGTTGTCGATGGTTCGACGTTTACTGAATCACCGGGAACAAATCCTCAAGCCACTGTAATGATGATGGGAAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAAATTGGCTGGTATATAA 1677 0.4043 MASIDTVKFSLFFVLLFWNCNFLPLSQGKEDHPYIKKASSFSSPSISDTSLNKAYDYIIVGGGGAGCPLAATLSQNFNLSSNSASQYFVSTDGVFNARGRVLGGGTSINAGFYTRASPRFISKVGWDAKLVNESYPWVEKQIVHRPKFSPFQRAVRDSLIDTGISPFNGFTYDHIYGTKVGGTIFDRFGRRHTSAELLASGNPDKLTVLVHATVQKIVFDTTGKRPKAVGVIFNDENGKQHEAMLGNNIQSEVILSSGAIGSPQMLLLSGIGPKADLQNLNISVVLNNRFVGKGMIDNPMNALYVPSNRPLHQSLIQTVGITKKGIYIEASSGFSQSNTSIHCHHGIMSAEIGQLSTIPPKQRSIEAIQAYVKNKRDIPVEAFKGGFVLSKVGSAWSVGELKLINTNVNENPSITFNYFSHPLDLKRCVDGIRMALKVVQSEHFTNYTLCKKKTAEKLLNLSVKANVNFIPKNANDTTSLEQFCKDTIITIWHYHGGCHVGKVVSPDYKVLDVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGKLAGI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01359 558 SUPERFAMILY FAD-linked reductases, C-terminal domain 295 497 - -
Vifa4g01359 558 ProSitePatterns GMC oxidoreductases signature 2. 258 272 IPR000172 GO:0016614|GO:0050660
Vifa4g01359 558 PANTHER OSJNBA0019K04.7 PROTEIN 22 552 - -
Vifa4g01359 558 Gene3D - 38 78 IPR036188 -
Vifa4g01359 558 Pfam GMC oxidoreductase 397 541 IPR007867 GO:0016614
Vifa4g01359 558 Gene3D - 144 490 - -
Vifa4g01359 558 Pfam GMC oxidoreductase 55 299 IPR000172 GO:0016614|GO:0050660
Vifa4g01359 558 PIRSF Alcohol_oxidase 34 82 IPR012132 GO:0050660
Vifa4g01359 558 PIRSF Alcohol_oxidase 75 557 IPR012132 GO:0050660
Vifa4g01359 558 Gene3D - 81 540 IPR036188 -
Vifa4g01359 558 SUPERFAMILY FAD/NAD(P)-binding domain 49 550 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01359 Vifa-Chr4 406117448 406121427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01359 55 553 Miscellaneous Gene Families AT3G56060 47.646 4.07e-168 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01359 K15403 - gmx:100779461 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00282 5 41376838 41379836 Vifa4g01359 4 406117448 406121427 PCT