Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00265 ATGAACGGTGGCGATGATGTTGTCGCAGCTCCGGCGGGTCCACCGTCGCCTTTGGAGTGGAAATTCTCTCAGGTGTTTGGTGAGCGTACGGCGGGTGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATCGAATTTGACAAGTCTGGCGATCATCTTGCTACTGGTGACCGTGGTGGTCGAGTGGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGTGAATCTAGAAGGGATTCAGAAAGGATGGATTATTCGATCAGCAGACATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCCGAGTTTGACTACCTTAAGAGTTTGGAGATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTGCTGAGATGAATGTCGACCCTTCAAAAACAATGGGAAATGGCAGTATTGCTAGTTCAAGTAATGTAATTAATCCTAAGCCAAGCCTTGAGAATGGAAGATATCCTGATTCAGATAGATCATTCAATTATCTTAGCTCTGACTTCTCATTTCCACCGGGAGGCATACCGTCACTAAGATTACCTGTGGTAGTAAGTAGTCATGAAACAAGCTTGGTGGCTCGATGTCGTAGAGTTTATGCCCATGCACACGATTATCATATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAATCTGGAAATAAGCAGTCAAAGTTTTAATATTGTTGATGTAAAACCTGCAAACATGGAAGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGGTCAATCCGTCTAATTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTGTTCGAGGAACAGGAGGCTCCAGGATCCAGATCATTTTTCACCGAGATCATTGCTTCTATATCTGACATAAAGTTTGGGAAGGATGGAAGATACATACTCAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGTCCTGTTGCTACTTACCAGGTTCATGAGTATCTAAGACCTAAGCTTTGTGATTTATATGAAAACGATTCGATTTTTGATAAGTTCGAGTGCTGTCTGAGCGGTGATGGACTGCGGGTAGCCACTGGTTCTTACAGCAATTTATTCCGAGTATTCGGCTGTTCTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCGTCTAGATCACTCGGAAATAGTCTAACACGAGTTGTAAGACGGGGAGCAGAAAACCCCGGGGTTGATGCAAACGGGAATTCGTTTGATTTCACGACCAAGCTGTTGCACTTAGCGTGGCATCCATCTGAAAACTCAATTGCCTGTGCTGCAGCAAATAGCTTGTACATGTACTATGCATAA 1557 0.4226 MNGGDDVVAAPAGPPSPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKIAEMNVDPSKTMGNGSIASSSNVINPKPSLENGRYPDSDRSFNYLSSDFSFPPGGIPSLRLPVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAENPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00265 518 SMART WD40_4 276 316 IPR001680 GO:0005515
Vifa5g00265 518 SMART WD40_4 105 145 IPR001680 GO:0005515
Vifa5g00265 518 SMART WD40_4 226 265 IPR001680 GO:0005515
Vifa5g00265 518 SMART WD40_4 31 66 IPR001680 GO:0005515
Vifa5g00265 518 SMART WD40_4 335 373 IPR001680 GO:0005515
Vifa5g00265 518 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 211 514 - -
Vifa5g00265 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Vifa5g00265 518 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Vifa5g00265 518 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 199 - -
Vifa5g00265 518 PIRSF PPA2_B55 12 518 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 518 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 MobiDBLite consensus disorder prediction 444 465 - -
Vifa5g00265 518 Gene3D - 36 178 IPR015943 GO:0005515
Vifa5g00265 518 MobiDBLite consensus disorder prediction 165 181 - -
Vifa5g00265 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 235 249 IPR018067 -
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 264 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 404 430 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 378 403 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 265 292 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 350 377 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 293 321 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 322 349 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 487 516 IPR000009 GO:0000159|GO:0019888
Vifa5g00265 518 SUPERFAMILY WD40 repeat-like 39 510 IPR036322 GO:0005515
Vifa5g00265 518 Gene3D - 222 324 IPR015943 GO:0005515
Vifa5g00265 518 MobiDBLite consensus disorder prediction 165 185 - -
Vifa5g00265 518 Gene3D - 325 513 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00265 Vifa-Chr5 37718514 37723968 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00265 K04354 - gmx:100799449 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01378 4 413641361 413646103 Vifa5g00265 5 37718514 37723968 ECH
Vifa5g00265 5 37718514 37723968 Vifa5g00265 5 37718514 37723968 ECH
Vifa5g00265 5 37718514 37723968 Vifa4g01378 4 413641361 413646103 PCT