Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01378 ATGAACGGTGGCGATGAGGGTGTTGTAGCTTCGGAGGAACCTTTGCAACCGTTGGAGTGGAAATTCTCGCAGGTTTTTGGCGAACGTGCGGCTGGAGAGGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAGTTTGACAAGTCTGGTGATCATCTTGCTACCGGTGATCGCGGTGGACGAGTAGTTCTCTTTGAACGGACGGATTCAAAAAATCATGGATCAAGAAAGGATTTGGAGAATACCGACTATTCTAATAGTCGGCATCCTGAGTTCCGCTATAAAACCGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTCAAGAGCTTGGAAATAGAAGAGAAAATTAATAAAATCAAATGGTGCCAAACCGCTACTGGTGCTGTATTCCTCCTATCTACAAATGACAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTGAAGAAAATTTCTGACATGAATATTGACCCTTCAAAAGCAAATGGAAATGGATCTATTGCAAGTTCGAGCAATTCTTGTATCCTTAAGCCACATCTTGCAAATGGAGGATCTTCGGATGAAGCATATAGTTATCTAAGCAGTGATTTCTCATTTCCACCTGGAGGCTTACCATCACTAAGATTACCCTCGGTAGCTAGCCATGAGACCAGTCTATTGGCTCGATGTCGTAGAGTATACGCACATGCTCATGACTATCACATCAATTCCATTTCAAATAACAGCGATGGAGAGACTTTCATATCCGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTCGATGTAAAGCCTACAAATATGGAGGATCTTACTGAGGTTATAACTTCAGCAGAATTTCACCCGACACATTGTAATACATTGGCATATAGCAGTTCGAAGGGCTCAATTCGTCTTGTTGATTTGCGGCAGTCAGCCTTATGTGATTCTCATGCCAAATTATTTGAAGAACATGAGGCCCCTGGGTCCAGATCGTTTTTCACGGAGATTATTGCTTCTATCTCGGATATAAAATTTGCTAGGGAGGGAAGATACATACTTAGTCGCGATTACATGTCTCTGAAGTTATGGGACATTAATATGGATTCTGGCCCAGTTTCAACATTCCGAGTTCACGAGTATTTAAGGCCAAAGCTATGTGATTTATACGAAAACGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGCGACGGATCCCGAGTTTCAACCGGTTCTTACAGCAATCTATTCCGCGTGTTCGGTTGCGCCCCAGGAAGTACGGAGGCTACAACTTTGGAAGCCAGCAAAAATCCAATGAGACGACAAGTTCCAACACCGGCAAGGCCTTCCAGATCAATCGGAAACAGTATCACAAGAGTCGTACGACGGGGAGCTGAAAACACTGGAGTCGACGCAAACGGAAACTCGTTCGACTTCACGACAAAGTTGCTACACTTAGCATGGCACCCGAGTGAAAATTCAATCGCCTGTGCTGCTGCAAATAGCTTATACATGTACTATGCATGA 1545 0.4278 MNGGDEGVVASEEPLQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSKNHGSRKDLENTDYSNSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTATGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDPSKANGNGSIASSSNSCILKPHLANGGSSDEAYSYLSSDFSFPPGGLPSLRLPSVASHETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEHEAPGSRSFFTEIIASISDIKFAREGRYILSRDYMSLKLWDINMDSGPVSTFRVHEYLRPKLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPARPSRSIGNSITRVVRRGAENTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01378 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 208 510 - -
Vifa4g01378 514 Gene3D - 218 512 IPR015943 GO:0005515
Vifa4g01378 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 104 118 IPR018067 -
Vifa4g01378 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Vifa4g01378 514 Gene3D - 36 217 IPR015943 GO:0005515
Vifa4g01378 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Vifa4g01378 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Vifa4g01378 514 SMART WD40_4 104 144 IPR001680 GO:0005515
Vifa4g01378 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Vifa4g01378 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 14 514 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Vifa4g01378 514 PIRSF PPA2_B55 9 514 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 120 148 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 91 119 IPR000009 GO:0000159|GO:0019888
Vifa4g01378 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Vifa4g01378 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01378 Vifa-Chr4 413641361 413646103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01378 K04354 - gmx:100799449 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01378 4 413641361 413646103 Vifa5g00265 5 37718514 37723968 ECH
Vifa4g01378 4 413641361 413646103 Vifa4g01378 4 413641361 413646103 ECH
Vifa5g00265 5 37718514 37723968 Vifa4g01378 4 413641361 413646103 PCT