Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00244 ATGAAACTTCTCAGAACAATCTTCATCCACAAGCGCCACCGTTTCCTCAACCCCAAACTCCTCTTTTCATCTCCATTTTCAAACTCTTTTTCATCAACACCACCGTCAGAGGAGACAGAAACCCTACATTCCAATACTAGAACCCAATCCACCAACAGTTGGAGCATATACGGCAACGTAGTCGCGAAACAGCGAATCAGCAATCACAGCGATGAAGATGAAGAAACCGAGGATGAAAAACCAAGTGAGAGTGAAAACGGGAGCATGATGATGAATTTGAAGAATAGAACTATAATTAGGACGGGGACGACGGCGGCGAAGAGAAGTACAGGGAAGGTGAAAACTCAGTGGGTTTGTTGTGATTGTGGGTATACTGCAGGACAATGGTGGGGAACTTGTCCTTCTTGTAACATGGTTGGGACAATGAAAGAGTTTCGTGAAGCGAAAGTTAGTGATGGTGTTGATAGTAGTAAGGTTAGAAGTGGTTTATCGGTTTCGGAAGATGCAATGAGAACTTGGCTCCCTCAGCGGGGTGATCAATTGCACCCGGTTAAATTGAGTGAAGTTAACAGTGGATTCAATGAGAAGGGTTGGCGATTTCCTTTGTCTGGCCCTTTTGGAGATGAGGTTTCTATTGTGCTCGGCGGTGGTCTTGTACCAGGCTCTTTGAATTTAGTTAGTGGTGATCCCGGTGTTGGGAAGAGTACACTGTTGTTGCAGATGGCAGCATTGATAGCAGAAGGATGCAATGGCAGTGATGGCGAGGCCTGTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTCATAGAGCAAATCGCCTTGGGATTAAATCTGATATTTATTTGTATTCAAGTACTGATATTGAGGACATATTAAGGATAGCTCAGTCTCTCCCCATTCGAGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAGTAGGAAGTGCTGGAGGAATTATGCAGGTGAAAGAATGTACTTCAGCTTTGATGCGATTTGCTAAAACAACAAACATACCAGTACTTTTGATTGGGCATGTAACAAAATCTGGAGAGATAGCCGGGCCTCGTGTTCTGGAGCATATTGTTGATGTTGTCTTGTATTTGGAAGGTGAGAGGTTCACTTCATATCGAATGCTCCGCGCTGTGAAAAACCGGTTTGGATCCACCGATGAGCTTGGAGTTTTTGAGATGTCAGAATCAGGATTTCAGGCTGTTTCCAATGCCACTGAAATGTTTCTCACTGAACAAGACCCTGATTCAGATGTTTTAGTTGGGTTAGCTTTTACCGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTTCTCAATCCCCAGTGGGAGGGTCAACTTCAAAAGTGGTTAATGGAGTTGACTCAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTCATATCTCTGTAAGTTCTGTGCATTTGAATGTTGTCAGTGGCTTGACATTGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTACCCTATTCCAAAGGGCATTGCATTCATTGGGGAAATTGGCCTTAGTGGAGAACTTCGCACGGTTCCTAGAATCGACAAAAGAGTACTTGCATTGGCAAAGTTGGGTTACAAAACCTGTGTAGTACCAAAGCAAGCCGTAAAAGCTTTAGGAACAGAAGGTCTAGAAAATATTAAAATAGTTGGTTGCAAGAATCTGAAGGAGTTTATTAATGTAGTATTCAGCAGATAA 1806 0.4269 MKLLRTIFIHKRHRFLNPKLLFSSPFSNSFSSTPPSEETETLHSNTRTQSTNSWSIYGNVVAKQRISNHSDEDEETEDEKPSESENGSMMMNLKNRTIIRTGTTAAKRSTGKVKTQWVCCDCGYTAGQWWGTCPSCNMVGTMKEFREAKVSDGVDSSKVRSGLSVSEDAMRTWLPQRGDQLHPVKLSEVNSGFNEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLVSGDPGVGKSTLLLQMAALIAEGCNGSDGEACPVVYVSGEESLQQIGHRANRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGIVGSAGGIMQVKECTSALMRFAKTTNIPVLLIGHVTKSGEIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESGFQAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLSQSPVGGSTSKVVNGVDSNRANMIKCVLIKQAGLHISVSSVHLNVVSGLTLTETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTVPRIDKRVLALAKLGYKTCVVPKQAVKALGTEGLENIKIVGCKNLKEFINVVFSR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00244 601 Pfam AAA domain 215 358 - -
Vifa5g00244 601 PANTHER DNA REPAIR PROTEIN RADA 35 600 - -
Vifa5g00244 601 Gene3D - 211 411 IPR027417 -
Vifa5g00244 601 NCBIfam DNA repair protein RadA 112 593 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vifa5g00244 601 Pfam Subunit ChlI of Mg-chelatase 484 570 - -
Vifa5g00244 601 CDD RadA_SMS_N 117 413 - -
Vifa5g00244 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 405 IPR027417 -
Vifa5g00244 601 ProSiteProfiles RecA family profile 1. 199 354 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vifa5g00244 601 PRINTS DNA repair protein radA signature 384 410 - -
Vifa5g00244 601 PRINTS DNA repair protein radA signature 119 143 - -
Vifa5g00244 601 PRINTS DNA repair protein radA signature 212 240 - -
Vifa5g00244 601 PRINTS DNA repair protein radA signature 349 377 - -
Vifa5g00244 601 PRINTS DNA repair protein radA signature 310 334 - -
Vifa5g00244 601 PRINTS DNA repair protein radA signature 463 486 - -
Vifa5g00244 601 Gene3D - 420 601 IPR014721 -
Vifa5g00244 601 SMART AAA_5 220 380 IPR003593 GO:0016887
Vifa5g00244 601 FunFam DNA repair protein radA isogeny 429 601 - -
Vifa5g00244 601 MobiDBLite consensus disorder prediction 27 50 - -
Vifa5g00244 601 FunFam DNA repair protein RadA 204 411 - -
Vifa5g00244 601 MobiDBLite consensus disorder prediction 67 90 - -
Vifa5g00244 601 SUPERFAMILY Ribosomal protein S5 domain 2-like 391 599 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00244 Vifa-Chr5 34540976 34553720 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00244 K04485 - gmx:100791181 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00244 5 34540976 34553720 Vifa5g00244 5 34540976 34553720 ECH
Vifa5g00244 5 34540976 34553720 Vifa4g01415 4 419279336 419284616 PCT