Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01415 ATGCTTTCGTTTTCAGTCTCTCGTTTCCCTTCATCCCAATCACCACCACCAACAAATCCAATTCTTCGCCTTAACCCACCACGACACCCCAACACTAATCACCAATTGAATTCCCAACAAACCGCTTCTTCTAGTTCTAGGGACAATAATAAAGCTGAAGACTTTCCAATAGAAAATGCCAATAGTAGAGCAAACTCAACTGAGGGTAGTGATGAAAGGGTTCTATTTGGAAGAAAGAAGAAGAAGGGTAAGGAAAAAGTTTACTGGGTTTGTAGTGATTGTGGGTACACTACTGGACAATGGTGGGGTGTGTGTCGATCATGCAGTGTTTCTGGTACTATGCAAGAGTTTCATGAGGAAAAAAGTAGTCATAGTAATGTTAAGGTTACTGGGTTTTCGGTTATGGAGAATGGTTTCGGGTCTTGGCTTCCACAGCAGAGTAGTGAGTTGCGGCCTTTGAGATTGTCTGAGGTTAATAGGGGACTTGATCATATGCATTGGAGAATTCCTATGTCTGGTCTTTTTGGAAATGAAGTTTCCAGAGTGCTTGGTGGTGGCCTTGTACCAGGCTCATTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTCTTGTTGCAGATTGCTGCGCTAATTGCGGAAGGGCACAAAGACGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGCGAAGAGAGCATTGAGCAAATTGGTAACAGAGCTGACCGCCTAACAATTGGATCAGATATTTATTTATATTCAAGTAATGATATTGAGGACATATTGAAGAAAGTTCATCATCTCTCTCCTCGGGCTCTAGTTGTTGATTCGATACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATGCAGGTGAAGGAGTGCACTTCAGCTTTACTGCGATTTGCAAAGACAACAAACATACCAGTTCTATTGATTGGGCATGTGACAAAATCTGGAGACATAGCAGGACCCCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACACTTCCCATCGTATGCTTAGAGCTGTGAAAAATCGTTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTTAGGACTTGAGGCTGTTTCAAATGCCAGTAAAATGTTTCTTAGTGAGCAAGACCTAGATTCAGATATTTTAGCTGGACTAGCTGTAGCTGTAATAATGGATGGGTCCAGAACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCGACAGGATCGAGGCAGTTTAATGGTATCCAAGCTAACAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTCCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGTGGATTGACACTGACCGAGACTGCAGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCCTGGAGCTTCCTATTCCAAATGACATTGCATTCATCGGTGAAATAGGTCTCGGTGGCGAGCTTCGCATGGTTAGTAGAATGGAAAAAAGGGTACACACAGTGGCGAAATTGGGTTACAGAATGTGTATAGCACCAAAGGCAGCTGAAAAAGTTTTGGGAACTGAAGGTTTGGAAAATATCAAAGTTGTTGGTTGCAGGAATCTCAAAGATGTTATCAACACTATATTTCCCAATGTCATGAGAAGAAGCAACTGA 1713 0.4232 MLSFSVSRFPSSQSPPPTNPILRLNPPRHPNTNHQLNSQQTASSSSRDNNKAEDFPIENANSRANSTEGSDERVLFGRKKKKGKEKVYWVCSDCGYTTGQWWGVCRSCSVSGTMQEFHEEKSSHSNVKVTGFSVMENGFGSWLPQQSSELRPLRLSEVNRGLDHMHWRIPMSGLFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAALIAEGHKDGEASPVVYVSGEESIEQIGNRADRLTIGSDIYLYSSNDIEDILKKVHHLSPRALVVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHLGLEAVSNASKMFLSEQDLDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVSRMEKRVHTVAKLGYRMCIAPKAAEKVLGTEGLENIKVVGCRNLKDVINTIFPNVMRRSN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01415 570 FunFam DNA repair protein radA isogeny 396 565 - -
Vifa4g01415 570 Pfam AAA domain 182 325 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 351 377 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 181 209 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 316 344 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 426 449 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 91 115 - -
Vifa4g01415 570 PRINTS DNA repair protein radA signature 277 301 - -
Vifa4g01415 570 SUPERFAMILY Ribosomal protein S5 domain 2-like 358 562 IPR020568 -
Vifa4g01415 570 CDD RadA_SMS_N 89 380 - -
Vifa4g01415 570 Gene3D - 397 569 IPR014721 -
Vifa4g01415 570 PANTHER DNA REPAIR PROTEIN RADA 29 564 - -
Vifa4g01415 570 MobiDBLite consensus disorder prediction 1 71 - -
Vifa4g01415 570 NCBIfam DNA repair protein RadA 84 557 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vifa4g01415 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 372 IPR027417 -
Vifa4g01415 570 SMART AAA_5 189 347 IPR003593 GO:0016887
Vifa4g01415 570 Pfam Rubredoxin metal binding domain 89 116 IPR041166 -
Vifa4g01415 570 ProSiteProfiles RecA family profile 1. 147 321 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vifa4g01415 570 Pfam Subunit ChlI of Mg-chelatase 443 533 - -
Vifa4g01415 570 Gene3D - 178 374 IPR027417 -
Vifa4g01415 570 FunFam DNA repair protein RadA 169 378 - -
Vifa4g01415 570 MobiDBLite consensus disorder prediction 25 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01415 Vifa-Chr4 419279336 419284616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01415 K04485 - gmx:100794165 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01415 4 419279336 419284616 Vifa4g01415 4 419279336 419284616 ECH
Vifa5g00244 5 34540976 34553720 Vifa4g01415 4 419279336 419284616 PCT