Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00236 ATGGACAGAAACAATTCCCGCAGACAAGTTGCTGCAATGAAACAGTCACTGTTTGATCAGGGGCTTCTTGATGAACAATTTATCCAACTTGAAGAATTGCAAGATGATGCTAATCCTAATTTTGTTGAGGAAATTGTCACTCTCTACTACCGCGATTCATCTAGGCTTATCTCTAACTTGGAGCAGACACTGGAGAGGAATCCATTGGATTTCAACAAACTGGACACAATCATGCACCAGTTTAAAGGAAGCAGCTCAAGCATTGGGGCCAAAAAGGTGAAAGCAGAATCGAGTCTAATTAGAGAATATTGCAGGACAGGAAATGCAGAAGGGTGTAGGAAGAGCTATCAACAAATGAAGAAAGAGTATGTAGCTTTGAGAAAGAAACTTGAAAATTATTTCCAACTAGCTAGGCAAGCTGGGCCTCTTGAAAGAGCATGTCGCCCAAAGTAA 453 0.4106 MDRNNSRRQVAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLEQTLERNPLDFNKLDTIMHQFKGSSSSIGAKKVKAESSLIREYCRTGNAEGCRKSYQQMKKEYVALRKKLENYFQLARQAGPLERACRPK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00236 150 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 142 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vifa5g00236 150 FunFam Histidine-containing phosphotransfer protein 4 1 145 - -
Vifa5g00236 150 Pfam Hpt domain 44 127 IPR008207 GO:0000160
Vifa5g00236 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 7 139 IPR036641 GO:0000160
Vifa5g00236 150 Gene3D HPT domain 1 145 IPR036641 GO:0000160
Vifa5g00236 150 Coils Coil 116 136 - -
Vifa5g00236 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00236 Vifa-Chr5 33053424 33054201 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00236 K14490 - gmx:100526849 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01426 4 423134812 423135833 Vifa5g00236 5 33053424 33054201 ECH
Vifa5g00236 5 33053424 33054201 Vifa5g00236 5 33053424 33054201 ECH
Vifa5g00236 5 33053424 33054201 Vifa4g01426 4 423134812 423135833 PCT