Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00160 ATGCCTCTCAGACTCGAAATCAAGCGTAAGCTTGCGCAGAGGTCGGAAAGAGTGAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACCGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTCGAGGTCACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCAGGAGCTGATGACATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCTCATACTGATTACATTAGGTGTGTGTCAGTTCATCCCACCCTTCCTTATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTCTGGGATTGGGAAAAAGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTTATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCGTCTCTTGATCGTACTATAAAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCTCACCAAAAAGGAGTGAATTGCGTTGATTACTTTACAGGTGGCGACAAACCTTATCTAATCACCGGTTCTGACGATCACACAGCAAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGATGGTCACACACACAATGTTTCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTGCGCATATGGCACTCAACAACTTATAGGCTCGAGAATACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGAGTTCACGCCGGGTTGTGATTGGATATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTAGCTAGCATGGACAACAGTGGAAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATTTGGAGGTTGCTGATGGAGAAAGGTTGCCTTTGGCTGTTAAGGAGCTGGGCACTTGTGATCTTTACCCACAAAATTTAAGGCACAATCCTAATGGAAGGTTCGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCACTGGCATGGAGAAACAGGTCATTTGGTTCAGCGCTAGAATTTGCTTGGTCTTCGGATGGAGAATATGCTGTCAGAGAAAGTACATCAAAAATTAAAATTTTCAGCAAAAGTTTTCAGGAAAAGAAGAGTGTCCGACCAACATTTTCAGCTGAACGAATATTTGGCGGCACTTTACTGGCAATATGTTCAAATGATTTCATCTGCTTTTATGATTGGACTGAATGCAGATTGATTTACCGCATTGATGTCAATGTGAAAAATCTCTACTGGGCTGATAGTGGTGATCTAGTAACAATTGCTAGTGATACGTCATTCTACATCCTAAAGTACAATCGTGATGTTGTTGCATCACATATAGATAGTGGAAAACCCGTAGATGAGGAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAATGAACGTGTAAGGACCGGTATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGAGAGGTAACTACAATGTTCCATTTGGATCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGGGTGTTTTTGATTGACAAAGAATTTAATGTTGTGGGATACACCCTGCTTTTGAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTTGCTCGATTCCTGGAATCACGGGGAATGATAGAGGATGCTCTTGAAGTAGCTACAGACCCTGACTACAGATTTGATCTAGCAATACAGCTAGGAAGATTAGAAGTTGCAAAGGGCATTGCAATAGAGGTGCAGAGTGAATCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTAGTGGCAAGTTACAAATGGCTGAGGAATGTTTGAATCATGCAATGGATTTGAGTGGGTTGTTGCTGCTATATTCTTCTTTCGGAGATGCAGAAGGAATTTCAAAACTTGCAACCCTTGCTAAGGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCCCAGAGATAGTGGCAATTTGGAGAAAGGATCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCAAATCTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAGTCTAAAGCTGCAGAAACACTGAATGTTTACCCTCCAGCAGAGCAATACATCAACCATGCTGACAAACCACATGTTACTCTTGTTGAAGCTTTCAGAAACTTGCAGATTGAAGAGGAAGAGCCTCTTGAGAATGGAGACTCTAATCATGAGTTGACTGAACAAAATGAAGAGCACTTTACAGAAGAAGAACACTACACGGATGAACAAAACGGAGAGGAAGGAAGCCAAGAAGAGGCAGTTGTAGTGGATGCCGAATCAACAGATGGTGCAGTACTTGTAAACGGCAGCGAGGCTGACGAAGAGTGGGTGCTTGCACCACATCACTAG 2754 0.4154 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVSVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGADLEVADGERLPLAVKELGTCDLYPQNLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSSDGEYAVRESTSKIKIFSKSFQEKKSVRPTFSAERIFGGTLLAICSNDFICFYDWTECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHIDSGKPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIAIEVQSESKWKQLGELAMSSGKLQMAEECLNHAMDLSGLLLLYSSFGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETLNVYPPAEQYINHADKPHVTLVEAFRNLQIEEEEPLENGDSNHELTEQNEEHFTEEEHYTDEQNGEEGSQEEAVVVDAESTDGAVLVNGSEADEEWVLAPHH 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00160 917 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Vifa5g00160 917 PANTHER COATOMER 5 313 - -
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Vifa5g00160 917 Gene3D - 11 300 IPR015943 GO:0005515
Vifa5g00160 917 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vifa5g00160 917 CDD WD40 17 297 - -
Vifa5g00160 917 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Vifa5g00160 917 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vifa5g00160 917 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vifa5g00160 917 Gene3D - 590 798 - -
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vifa5g00160 917 SMART WD40_4 46 85 IPR001680 GO:0005515
Vifa5g00160 917 SMART WD40_4 174 215 IPR001680 GO:0005515
Vifa5g00160 917 SMART WD40_4 4 43 IPR001680 GO:0005515
Vifa5g00160 917 SMART WD40_4 218 257 IPR001680 GO:0005515
Vifa5g00160 917 SMART WD40_4 88 127 IPR001680 GO:0005515
Vifa5g00160 917 SMART WD40_4 131 171 IPR001680 GO:0005515
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Vifa5g00160 917 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Vifa5g00160 917 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Vifa5g00160 917 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Vifa5g00160 917 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Vifa5g00160 917 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Vifa5g00160 917 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Vifa5g00160 917 CDD Coatomer_WDAD_beta-like 304 779 - -
Vifa5g00160 917 FunFam Coatomer subunit beta 590 798 - -
Vifa5g00160 917 PIRSF Beta'-COP 2 890 IPR016453 -
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Vifa5g00160 917 MobiDBLite consensus disorder prediction 862 917 - -
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vifa5g00160 917 MobiDBLite consensus disorder prediction 862 880 - -
Vifa5g00160 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vifa5g00160 917 FunFam Coatomer subunit beta 11 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00160 Vifa-Chr5 21045616 21058457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00160 51 292 Miscellaneous Gene Families AT5G08390 24.597 1.60e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00160 K17302 - gmx:100815780 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00160 5 21045616 21058457 Vifa5g00160 5 21045616 21058457 ECH
Vifa5g00160 5 21045616 21058457 Vifa2g05481 2 1631187102 1631192298 PCT