LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00155	ATGGGTGCTACTCTTCCTCCCAAAGAGGCCAACCTCTTCAAACTCATCGTGAAATCCTATGAAACCAAACAATACAAAAAGGGTCTCAAAGCAGCCGATGCCATTTTGAAAAAATATCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATATGAACTTGTTCGCCAAGGATTGAAGAATGACCTTAAGAGTCATGTTTGCTGGCATGTTTATGGTCTTCTCTATCGGTCGGATAGAGAATACAGGGAAGCAATCAAGTGCTATCGAAATGCACTAAGGATAGATCCTGACAATATTGAAATCTTACGTGACCTATCTCTCCTACAGGCTCAAATGCGAGATTTAGCTGGCTTTGTTGAGACGCGGCAACAACTTCTGACTCTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTTCACATCATTTGAACTCTAATGCATCAAAAGCTATTGAAATTCTGGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGGATTGAGCATGGTGAAATGCTTTTATATAAGGTCTCGTTGTTGGAGGAATGTGGATTTTTTGAGAGAGCTTTTGAGGAGTTGCAGAAGAAGGAGTCAAAAATTATTGATAAGCTTGGATATAAAGAACAAGAGGTTTCACTGTTAGTCAAGCTTGGTCGCTTAGAAGAAGGCGAGAAATTGTACCAGACATTGCTTTCCATGAATCCAGACAATTATAGATATTATGAAGGCCTTCAACAATGTGTAGGATTATATTCTGCAAATGGCCATTTTTCTCCTGATGAAATAGATCGGTTAGATACCTTGTACAAAACACTTGGGCAGCAATTTAAGTGGTCATCTGCTGTTAAGAGAATACCACTAGATTTTCTTCAAGGTGATAGGTTTCGAGAAGCTGCGGATAGTTATATTAGACCTCTTCTAACTAAGGGAGTTCCATCTCTTTTCTCGGATCTTTCTTCTTTATACAATCACCCTGGGAAGGCAGACATTTTGGAACAAATTATTCTTGAGTTAGAGAATTCTATTAGGATAACTGGTCAATACCCTGGGAGAGTAGAAAAAGAGCCCCCATCAACTTTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGGAGGGGTCAATATGAAATCGCACTTTCTAAAATCGATGAGGCTATAGAACATACCCCTACCGTCATTGATCTATACTCTGCAAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCATTGGCAGATGAAGCTAGGTGTATGGATCTCGGCGATCGTTATGTTAATAGTGACTGTGTGAAGCGCATGCTACAGGCTGATCAGATGGTTTTGGCCGAAAAAACTGCTGTGCTATTCACAAAAGATGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCCACTTCCGCCAAGGGGATCTTGGACTGTCCCTCAAAAAATTCTTAGCAGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTCAATTTCAAGACAGATTGCATTCACATGCATACTTTCGTAAAGCGGCTGCAGGATCTATCAGATGTTATATAAGATTGCATGATTCTCCTCCAAAGTCATCTGACGAGGAGGATAGTGAAATGTCTAAGTTGCTTCCTGCTCAGAAAAAGAAATTGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAAAAAGAGGCAGAAGAGAAAAATGAAGAATCAAGTGCTAGTGGTATATCAAAGTCTGGGAAGCGTCATACAAAACCCGTAGATCCAGATCCTCGGGGTGAAAAGTTGTTGCAGGTTGAAGATCCATTGTTGGAAGCCACAAAATACTTGAAATTGCTGCAGAAGAATTCACCTGATTCGTTGGAGACTCACTTGCTCTCCTTTGAGTTATACATGAGAAAACAGAAGATTTTGCTAGCCTTCCAGGCTTTAAAGCAATTGCTGAGGTTGGATGCCGAACACCCTGATTCTCATTGTTGCTTGATTAAATTCTTCCATAAAGTGGGATCGATGAATACTCCCGTGACTGATGGTGAGAAACTCGTTTGGAGTGTTTTAGAAGCTGAGCGCCAAACTATAAGTCAGCTGCACGGAAAATCTTTGCTTGAGGCAAATAATCTTTTCCTTGAAAAACATGAAGGTTCTTTGATGCATAGAGCTGCTGTTGGAGAAATGGTGTACCTTTTAGATCCCAATAGAAGATCTGAGGCTGTCAAGTTGATTGAAGGGTCAACAAATAACCTCGTGTCAAGAAATGGCGCACTTGGACCAATCCCGGAGTGGAGACTTAAAGACTGTATTGCAGTTCATAAACTTCTCGGATCAGTTCTTGAGGATCAGGATGCTGCATTGAGATGGAAAGTACGCTGTGCCGAGTTTTTCCCATACTCTACATACTTTGAGGGTAGTCAAAGCTCTGCCTCACCCAACTCTGCTCTTAGTCAAATATGCAAGACCGCCGCAAATGGTACTTCTAGCCATTCACTGGGCGATCACGTTGTGGATCATGTCACATCAAACGGAAAACTCGACACATTTAAAGATCTCACTATCTGA	2706	0.412	MGATLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKYPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLAGFVETRQQLLTLKSNHRMNWIGFAVSHHLNSNASKAIEILEAYEGTLEDDYPPENERIEHGEMLLYKVSLLEECGFFERAFEELQKKESKIIDKLGYKEQEVSLLVKLGRLEEGEKLYQTLLSMNPDNYRYYEGLQQCVGLYSANGHFSPDEIDRLDTLYKTLGQQFKWSSAVKRIPLDFLQGDRFREAADSYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQIILELENSIRITGQYPGRVEKEPPSTFMWTLFLLAQHYDRRGQYEIALSKIDEAIEHTPTVIDLYSAKSRILKHAGDLAAAAALADEARCMDLGDRYVNSDCVKRMLQADQMVLAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESHFRQGDLGLSLKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLQFQDRLHSHAYFRKAAAGSIRCYIRLHDSPPKSSDEEDSEMSKLLPAQKKKLRQKQRKAEARAKKEAEEKNEESSASGISKSGKRHTKPVDPDPRGEKLLQVEDPLLEATKYLKLLQKNSPDSLETHLLSFELYMRKQKILLAFQALKQLLRLDAEHPDSHCCLIKFFHKVGSMNTPVTDGEKLVWSVLEAERQTISQLHGKSLLEANNLFLEKHEGSLMHRAAVGEMVYLLDPNRRSEAVKLIEGSTNNLVSRNGALGPIPEWRLKDCIAVHKLLGSVLEDQDAALRWKVRCAEFFPYSTYFEGSQSSASPNSALSQICKTAANGTSSHSLGDHVVDHVTSNGKLDTFKDLTI	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00155	901	PIRSF	NAT_A	1	818	IPR021183	-
	Vifa5g00155	901	MobiDBLite	consensus disorder prediction	577	594	-	-
	Vifa5g00155	901	ProSiteProfiles	TPR repeat profile.	77	110	IPR019734	GO:0005515
	Vifa5g00155	901	FunFam	N-terminal acetyltransferase catalytic subunit (NAT1)	505	725	-	-
	Vifa5g00155	901	MobiDBLite	consensus disorder prediction	577	646	-	-
	Vifa5g00155	901	PANTHER	N-TERMINAL ACETYLTRANSFERASE-RELATED	1	825	-	-
	Vifa5g00155	901	Pfam	N-terminal acetyltransferase A, auxiliary subunit	186	696	IPR021183	-
	Vifa5g00155	901	Gene3D	-	2	503	-	-
	Vifa5g00155	901	MobiDBLite	consensus disorder prediction	606	622	-	-
	Vifa5g00155	901	Coils	Coil	596	620	-	-
	Vifa5g00155	901	SMART	tpr_5	380	413	IPR019734	GO:0005515
	Vifa5g00155	901	SMART	tpr_5	43	76	IPR019734	GO:0005515
	Vifa5g00155	901	SMART	tpr_5	77	110	IPR019734	GO:0005515
	Vifa5g00155	901	Gene3D	-	505	725	-	-
	Vifa5g00155	901	SUPERFAMILY	TPR-like	17	440	IPR011990	GO:0005515
	Vifa5g00155	901	MobiDBLite	consensus disorder prediction	631	646	-	-
	Vifa5g00155	901	Pfam	TPR repeat	84	123	-	-
	Vifa5g00155	901	FunFam	N-terminal acetyltransferase A, auxiliary subunit	2	503	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00155	Vifa-Chr5	19771312	19782727	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00155	K20792		-	gmx:100776968	1527.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g00155	5	19771312	19782727	Vifa5g00155	5	19771312	19782727	ECH
	Vifa5g00155	5	19771312	19782727	Vifa2g05490	2	1634634449	1634641055	PCT