Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00136 ATGAGTCATGCACATTCTCATACCGGTTCCGGTAGTAGAACTACTCGACGAGCTTTCGAGTTCGGGAAGACACATGTCGTGAGGCCTAAGGGAAAACACCAAGCTACTATAGTTTGGTTGCATGGACTTGGTGATAATGGTTTGAGTTCATCTCAATTGTTGGAATCACTTCCACTTGCAAATATAAAATGGATTTGTCCTACTGCTCCTACCCGTCCTGTGGCGATACTCGGCGGTTTTCCCTGCACTGCATGGTTTGATGTGGGAGAGCTTTCAGAAGATGGTCCAGATGATTGGGAAGGTTTAGATGCTTCAGCAGCCCATATTGCTAACTTGCTGTCAACAGAGCCAGCTGATGTGAAAGTTGGTATTGGAGGGTTCAGTATGGGTGCAGCAATAGCATTATACTCTTCAACTTGTTATGCCATGGGAAGGTATGGAAATGGAATGCCATATCCTGTCTGTTTAAGAGCAGTTGTTGGACTCAGTGGTTGGCTTCCAGGATCAAGGAGCTTAGGGAACAAGATAGAAGTGTCACACGAATCACGAAGGCGAGCTGCTTCGTTACCGATTTTACTATGCCATGGAATCAGTGATGATGTAGTACACTGCAAGTATGGAGAGAAATCTGCACAATCCTTAAGCTCAGCCGGGTTTCGATATATAGCATTCAAATCCTATGAAGGGCTTGGTCATTACACAGTTCCAAGGGAGATGGATGAGGTTTCCAACTGGCTTAGTTCAAGGTTGGGGCTTGAAGGATTCTCATCTTAA 774 0.4522 MSHAHSHTGSGSRTTRRAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLANIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAAIALYSSTCYAMGRYGNGMPYPVCLRAVVGLSGWLPGSRSLGNKIEVSHESRRRAASLPILLCHGISDDVVHCKYGEKSAQSLSSAGFRYIAFKSYEGLGHYTVPREMDEVSNWLSSRLGLEGFSS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00136 257 Pfam Phospholipase/Carboxylesterase 24 247 IPR003140 GO:0016787
Vifa5g00136 257 Gene3D alpha/beta hydrolase 15 251 IPR029058 -
Vifa5g00136 257 SUPERFAMILY alpha/beta-Hydrolases 25 250 IPR029058 -
Vifa5g00136 257 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00136 Vifa-Chr5 16244429 16246677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00136 9 254 Acyl Lipid Metabolism Gene Families AT3G15650 78.862 5.74e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00136 K06130 - gmx:100798395 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05530 2 1643487319 1643489625 Vifa5g00136 5 16244429 16246677 ECH
Vifa5g00136 5 16244429 16246677 Vifa5g00136 5 16244429 16246677 ECH
Vifa5g00136 5 16244429 16246677 Vifa2g05530 2 1643487319 1643489625 PCT