Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05068 ATGGTGAACAAAATGCATGGAATAGTGTTGTGTTTATTGGTGTCAACTCTTTTGGTTTCTGCGGTATCATTTGCATCAAGTGATGGTCTCAGAAGAATTGGATTGAAAAAGATTAAATTTGACCCTAACTATAAGCTTGCTGCTCGAGTTAGATCGAAAGATGCTGAGTTTTTCGGTAAAAAGTATAATGGCATAAACAATTTGCTTCATTCCGAACAAGCTGATGTTGTTGCGTTGAAGAATTACCTAGATGCTCAGTACTATGGTGAAATATTTATTGGAACATCTCCTCAGAAGTTTACCGTTGTTTTTGATACTGGTAGCTCTAATTTGTGGGTTCCCTCTTCCAAATGTGCCTTCTCGGTTGCATGCTACTTCCATGCCAAGTACAGGTCAACCAAATCAAATACTTATAAGAAAAATGGGACTGCTGCTGCAATTCATTATGGTACTGGGGCAATTTCTGGCTTCTTTAGCTATGACAATGTCAAAGTTGGTGACATAGTTGTCAAAAATCAGGAATTTATTGAAGCAACTAAGGAGCCCAGTGTTACCTTTTTGGTGGCCAAGTTTGATGGTATATTGGGACTTGGATTTCAAGAGATATCGGTTGGAAGTGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTCTTATTCAAGAATCAGTATTTTCATTTTGGTTCAACCGTAAACCAGAGGAAGAGGAAGGGGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCTCACTACAAGGGAAATCACACTTTTGTTCCTGTGACAAGAAAAGGATATTGGCAGTTTGATATGGAAGATGTAATTATTGATGGTAATTCCACTGGCGTTTGTGCTGATGGCTGTTCAGCCATTGCTGACTCGGGGACTTCTTTGTTAGCAGGTCCAACGACTGTAATTACCATGATAAACCATGCAATTGGAGCATCTGGAGTTGTAAGCAAAGAGTGCAAGACCATTGTTGCAGAGTATGGTCAAACAATATTGGACCTGCTTTTATCTGAAGCACAGCCGAAGAAGATCTGTTCCCAAATTGGATTGTGCGCTTTTGATGGCACTCGTGGTGTTACTTTGGGTATCGAGAGTGTAGTAGAAGAGAATGAAAGAAAATCATCTGGTGGTTTTCACACTGCTACTTGTTCTGCCTGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAAGCAAAACAAGACCCAAGACCAGATAATAACCTATATCAATAATCTTTGTGATAAAATGCCTAGCCCAATGGGAGAATCGGCTGTTGATTGTGAGAATATCTCTTCCTTGCCTGTAGTTTCCTTCACAATTGGTGGACGAACTTTTGACCTTGCCCCAGAGGAGTACATACTTAAGGTGGGAGAAGGTCCTGCAGCTCAATGCATTAGCGGCTTTATTGCTCTAGATGTTCCTCCTCCACGAGGCCCTCTCTGGATCCTTGGAGATATCTTCATGGGGCGTTACCACACAGTCTTTGATTTTGGTAATTTAAGAGTCGGATTTGCTGATGCAGCTTAA 1536 0.4128 MVNKMHGIVLCLLVSTLLVSAVSFASSDGLRRIGLKKIKFDPNYKLAARVRSKDAEFFGKKYNGINNLLHSEQADVVALKNYLDAQYYGEIFIGTSPQKFTVVFDTGSSNLWVPSSKCAFSVACYFHAKYRSTKSNTYKKNGTAAAIHYGTGAISGFFSYDNVKVGDIVVKNQEFIEATKEPSVTFLVAKFDGILGLGFQEISVGSAVPVWYNMVEQGLIQESVFSFWFNRKPEEEEGGEIVFGGVDPAHYKGNHTFVPVTRKGYWQFDMEDVIIDGNSTGVCADGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSKECKTIVAEYGQTILDLLLSEAQPKKICSQIGLCAFDGTRGVTLGIESVVEENERKSSGGFHTATCSACEMAVVWMQNQLKQNKTQDQIITYINNLCDKMPSPMGESAVDCENISSLPVVSFTIGGRTFDLAPEEYILKVGEGPAAQCISGFIALDVPPPRGPLWILGDIFMGRYHTVFDFGNLRVGFADAA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05068 511 SMART sapb_4 281 353 IPR008139 -
Vifa4g05068 511 SMART sapb_4 383 467 IPR008139 -
Vifa4g05068 511 SUPERFAMILY Acid proteases 35 510 IPR021109 -
Vifa4g05068 511 ProSiteProfiles Peptidase family A1 domain profile. 87 508 IPR033121 -
Vifa4g05068 511 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 20 508 IPR001461 GO:0004190|GO:0006508
Vifa4g05068 511 Pfam Saposin-like type B, region 2 320 353 IPR008138 -
Vifa4g05068 511 ProSiteProfiles Saposin B type domain profile. 381 422 IPR008139 -
Vifa4g05068 511 FunFam Vacuolar aspartic proteinase 380 510 - -
Vifa4g05068 511 Pfam Eukaryotic aspartyl protease 86 509 IPR033121 -
Vifa4g05068 511 FunFam Lysosomal aspartic protease 73 315 - -
Vifa4g05068 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 289 300 IPR001969 GO:0004190|GO:0006508
Vifa4g05068 511 CDD phytepsin 77 509 IPR033869 GO:0004190
Vifa4g05068 511 Gene3D Acid Proteases 31 245 IPR021109 -
Vifa4g05068 511 PRINTS Pepsin (A1) aspartic protease family signature 93 113 IPR001461 GO:0004190|GO:0006508
Vifa4g05068 511 PRINTS Pepsin (A1) aspartic protease family signature 289 300 IPR001461 GO:0004190|GO:0006508
Vifa4g05068 511 PRINTS Pepsin (A1) aspartic protease family signature 239 252 IPR001461 GO:0004190|GO:0006508
Vifa4g05068 511 PRINTS Pepsin (A1) aspartic protease family signature 484 499 IPR001461 GO:0004190|GO:0006508
Vifa4g05068 511 ProSiteProfiles Saposin B type domain profile. 317 357 IPR008139 -
Vifa4g05068 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Vifa4g05068 511 Pfam Saposin-like type B, region 1 384 420 IPR007856 GO:0006629
Vifa4g05068 511 SUPERFAMILY Saposin 318 420 IPR011001 -
Vifa4g05068 511 FunFam Aspartic proteinase A1 317 420 - -
Vifa4g05068 511 Gene3D - 317 420 - -
Vifa4g05068 511 Gene3D Acid Proteases 246 511 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05068 Vifa-Chr4 1586866005 1586869939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05068 K08245 - gmx:100779619 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g05068 4 1586866005 1586869939 Vifa1g09918 1 1621438433 1621441340 PCT