Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09918 ATGGGAAACAAGGTGAATGTGGTGACGTTGTGTTTGTGTGTGTGGACCCTCTTGTTTTGTTTTGTTTCTTGTGTGCCAAATGAGGGGTTGCGTAGGATTGGTTTGAGAAAGGTGAAATTGGGACCCAAGGATTTCTTGGGGTTGAAAGGTGGTGAAGCTTTATTGTCTAAAAATATTCTTGAAGGAACTGAGGAATTCGATGTTGTTGTGTTGAAGAATTATTTGGATGCTCAGTACTACGGGGAGATTTCCATTGGTACTCCTCCTCAGAAGTTTACGGTGATTTTTGACACTGGTAGCTCGAATACATGGGTTCCGTCGGTTAAATGTTATTTCTCGCTTGCATGCGTATTCCATGCCAAGTACAAGTCTAGCCAATCAAGTACTTACAAGCCAAATGGGACTTCTGCTGCAATTCAGTATGGTACTGGAGCAATTTCTGGTTTCTTTAGCTATGACAATATAAAAGTTGGTGATATTGTTGTAAAAGATCAGGAATTTATTGAAACAACCAGAGAACCTGGGATTACATTTGTGGCGGCTAAGTTTGATGGTTTGCTTGGACTTGGATTTCAAGAGATATCAGTTGGAAATTCTGTCCCAATATGGTACAATATGGTTGAACAAGGTCTTGTGAAGGATCCTGTATTTTCATTTTGGCTCAATCGTAATCCCAAAGAAGAGGAAGGAGGTGAGATTGTTTTCGGTGGTGTTGATCCTGATCACTTCAAGGGAAAACATACTTACGTGCCTGTGACACGAAAAGGATATTGGCAGTTTGACATGGGAGATGTGCTTATTGATGGAAAACCCACTGGATATTGTGCTAAAGACTGTTCAGCAATTGCAGACTCAGGGACTTCCTTGTTGGCAGGACCAAAGACTGTAGTTACTATGATAAATCAAGCTATTGGAGCATCTGGAGTTTACAGTCAAGAATGCAGGAATGTTGTTGATCAATATGGACAAACAATTTTGCAATTGCTCTTGGCTGAAACACAGCCAAAGAAGATATGCTCCCAAATTGGGTTGTGCACGTTTGATGGGACTCGTGGTGTTAGTATGGGTATCCAGAGTGTTGTGCCACAGACTGATAGAATATCATCTGGCGGTCATCAAGATGCTACATGTTCTGTATGCGAAATGGCTATCGTTTGGATGCAGAGCCAGCTGAAGCAGAATCAAACGGAAGAGCAGATAATAAACTACGCCAACGCGCTTTGTGATAAAGTGCCTAACCCAATGGGACAATCATCTGTTGATTGTGCAAAGATCCCTTCCATGCCTAATGTTTCCTTCACCATTGGTGGAAAAACGTTTGACCTTGCCCCACAAGAGTACATACTGAAGGTGGGTGAAGGTCCTCAAGCCCAATGCATTAGTGGCTTTACTGCTTTGGATGTTCCTCCTCCTCGTGGCCCACTTTGGATCCTTGGAGATATCTTCATGGGGCGCTATCATACCGTCTTTGATTATGGTAAACTCAGAGTTGGATTTGCCGAAGCAGCATAG 1512 0.4259 MGNKVNVVTLCLCVWTLLFCFVSCVPNEGLRRIGLRKVKLGPKDFLGLKGGEALLSKNILEGTEEFDVVVLKNYLDAQYYGEISIGTPPQKFTVIFDTGSSNTWVPSVKCYFSLACVFHAKYKSSQSSTYKPNGTSAAIQYGTGAISGFFSYDNIKVGDIVVKDQEFIETTREPGITFVAAKFDGLLGLGFQEISVGNSVPIWYNMVEQGLVKDPVFSFWLNRNPKEEEGGEIVFGGVDPDHFKGKHTYVPVTRKGYWQFDMGDVLIDGKPTGYCAKDCSAIADSGTSLLAGPKTVVTMINQAIGASGVYSQECRNVVDQYGQTILQLLLAETQPKKICSQIGLCTFDGTRGVSMGIQSVVPQTDRISSGGHQDATCSVCEMAIVWMQSQLKQNQTEEQIINYANALCDKVPNPMGQSSVDCAKIPSMPNVSFTIGGKTFDLAPQEYILKVGEGPQAQCISGFTALDVPPPRGPLWILGDIFMGRYHTVFDYGKLRVGFAEAA 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09918 503 SMART sapb_4 273 345 IPR008139 -
Vifa1g09918 503 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 281 292 IPR001969 GO:0004190|GO:0006508
Vifa1g09918 503 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 94 105 IPR001969 GO:0004190|GO:0006508
Vifa1g09918 503 Gene3D Acid Proteases 32 237 IPR021109 -
Vifa1g09918 503 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 64 501 IPR001461 GO:0004190|GO:0006508
Vifa1g09918 503 SUPERFAMILY Saposin 309 412 IPR011001 -
Vifa1g09918 503 Gene3D - 309 412 - -
Vifa1g09918 503 Pfam Saposin-like type B, region 2 312 345 IPR008138 -
Vifa1g09918 503 CDD phytepsin 69 501 IPR033869 GO:0004190
Vifa1g09918 503 Gene3D Acid Proteases 238 503 IPR021109 -
Vifa1g09918 503 ProSiteProfiles Saposin B type domain profile. 309 349 IPR008139 -
Vifa1g09918 503 ProSiteProfiles Saposin B type domain profile. 373 414 IPR008139 -
Vifa1g09918 503 Pfam Eukaryotic aspartyl protease 78 502 IPR033121 -
Vifa1g09918 503 ProSiteProfiles Peptidase family A1 domain profile. 79 500 IPR033121 -
Vifa1g09918 503 FunFam Aspartic proteinase A1 309 412 - -
Vifa1g09918 503 SUPERFAMILY Acid proteases 13 502 IPR021109 -
Vifa1g09918 503 PRINTS Pepsin (A1) aspartic protease family signature 476 491 IPR001461 GO:0004190|GO:0006508
Vifa1g09918 503 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Vifa1g09918 503 PRINTS Pepsin (A1) aspartic protease family signature 231 244 IPR001461 GO:0004190|GO:0006508
Vifa1g09918 503 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Vifa1g09918 503 FunFam Vacuolar aspartic proteinase 363 502 - -
Vifa1g09918 503 FunFam Lysosomal aspartic protease 65 307 - -
Vifa1g09918 503 Pfam Saposin-like type B, region 1 376 412 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09918 Vifa-Chr1 1621438433 1621441340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09918 K08245 - gmx:547943 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09918 1 1621438433 1621441340 Vifa1g09918 1 1621438433 1621441340 ECH
Vifa4g05068 4 1586866005 1586869939 Vifa1g09918 1 1621438433 1621441340 PCT