Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05039 ATGATAACAGTTTCCGATTGGATCCGTTCATCTTCGAATCAACAAATCGATTTGTACAAGCAATGGTTCAACATTGCTGATTCAGATGGTGATGGCCGTGTCACTGGAAATGATGCTACAAAGTTCTTCGCTCTTTCCACCTTGTCTCGCCCTCAACTCAAGCAGGTTTGGGCGATTGCTGATACCAAGAGACAAGGTTTTTTAGGGTTTGAAGAGTTTGTTACTGCAATGCAGCTCATTTCTGTGGGACAGGCAGGGTATGATCTCAACTCGGATATTCTAAAAACTGAAATTGACAGCGAAAAGATAAAATCTCCAGTACTGGAAGGAATTGATGCATTAGTAGCAAATTCAAAGAGTCCCACAAAAAATGCACAACCTGATGTATTTGGGACTGGCCAGCTTCAGCCTTTTCCACGAGTTGCTTCAAAATCTGCAAAGAAGTTACCCCTCAATGCGGTGACATCAATAATAGATGGCTTGAAGAAATTGTATGTGGAGCGGCTAAAACCGTTGGAGGCTACTTATCGATTCAATGATTTTGTATCTCCATTATTGACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTACTCGGTCAATATTCTACTGGAAAAACAACATTTATTAAACATTTGCTAAGATATGAATATCCAGGGGCGCACATTGGACCAGAACCTACAACTGATAGATTTGTCGCTGTCATGTCTGGAACTGATGAGAGGAGCATTCCTGGAAATACTGTAGCTGTTGATGCTAGCATGCCTTTTAGTGGCCTGACAAGTTTTGGTAGTTCATTTTTGTCAAAGTTTCAATGCTCTCAAATGCCACATCCACTGCTAGATGAAATAACATTTATAGACACCCCTGGTGTCCTCTCTGGAGAAAAGCAAAGGACTCAACGAAGTTATGATTTCACCGGTGTTATATCTTGGTTTGCTGCAAAATACCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCACTGATGTGGTCCTTGGGAAAAGTTCTAAATACCCCGGAAGTTGTACGTGTATATATTGGCTCATTCAATGATAAACCTATCAATGAAGGCTTTGTCGGCCCATTAGGACAGGAGCTTTTTGAGAAAGAACAAGGTGATCTCCTTTCAGATTTGGCAGATATTCCAAGAAAGGCGTGCGACGGTCGGATCAATGAATTTGTCAAACGTGCTAGATCTGCTAAAATCCATGCCTATATAATTAGTCATCTTAAGATGCAGATGCCTGCAATGATGGGCAAAGCTAAAGTGCAACAAAGGCTTATAGATGATCTTGAAGATGAATTTAAAAAGGTTCAAAGGGAGTTTCATTTACCAGTTGGTGATTTTCCTAATGTAGATCACTTCAGAGAGGTTTTGAATACTTACAGCATTGACAAATTTGATAAATTGAAGCCTAAAATGATTCAAGCGGTAGATGACATGCTTGGTTATGAAATACCAGAGCTGTTAAAAAAATTTAGAAATCCTTATGAGTAA 1509 0.3963 MITVSDWIRSSSNQQIDLYKQWFNIADSDGDGRVTGNDATKFFALSTLSRPQLKQVWAIADTKRQGFLGFEEFVTAMQLISVGQAGYDLNSDILKTEIDSEKIKSPVLEGIDALVANSKSPTKNAQPDVFGTGQLQPFPRVASKSAKKLPLNAVTSIIDGLKKLYVERLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRYEYPGAHIGPEPTTDRFVAVMSGTDERSIPGNTVAVDASMPFSGLTSFGSSFLSKFQCSQMPHPLLDEITFIDTPGVLSGEKQRTQRSYDFTGVISWFAAKYQIDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINEGFVGPLGQELFEKEQGDLLSDLADIPRKACDGRINEFVKRARSAKIHAYIISHLKMQMPAMMGKAKVQQRLIDDLEDEFKKVQREFHLPVGDFPNVDHFREVLNTYSIDKFDKLKPKMIQAVDDMLGYEIPELLKKFRNPYE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05039 502 Pfam Dynamin family 197 301 IPR045063 -
Vifa4g05039 502 Pfam Domain of unknown function (DUF5600) 393 493 IPR040990 -
Vifa4g05039 502 Gene3D - 199 320 IPR027417 -
Vifa4g05039 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 312 IPR027417 -
Vifa4g05039 502 CDD EH 19 85 IPR000261 GO:0005515
Vifa4g05039 502 SUPERFAMILY EF-hand 12 98 IPR011992 -
Vifa4g05039 502 Gene3D - 363 500 - -
Vifa4g05039 502 Pfam N-terminal EH-domain containing protein 160 192 IPR031692 -
Vifa4g05039 502 Gene3D - 135 198 - -
Vifa4g05039 502 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vifa4g05039 502 SMART efh_1 52 80 IPR002048 GO:0005509
Vifa4g05039 502 SMART efh_1 18 46 IPR002048 GO:0005509
Vifa4g05039 502 Coils Coil 425 445 - -
Vifa4g05039 502 PANTHER EH DOMAIN 14 315 - -
Vifa4g05039 502 Gene3D - 10 105 - -
Vifa4g05039 502 Pfam Cytoskeletal-regulatory complex EF hand 14 80 IPR000261 GO:0005515
Vifa4g05039 502 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Vifa4g05039 502 SMART eh_3 8 103 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05039 Vifa-Chr4 1579212392 1579217191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05039 8 502 EF-hand Containing Proteins AT4G05520 67.412 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05039 K12483 - gmx:100803757 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g05039 4 1579212392 1579217191 Vifa1g09872 1 1609476913 1609481032 PCT